PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01437g03008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 390aa    MW: 43163 Da    PI: 8.6141
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01437g03008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.89.2e-2469113145
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                               d+epgrCrRtDGKkWRCs++ ++++k+CErH+hrgr+rsrk++e+
  Niben101Scf01437g03008.1  69 DPEPGRCRRTDGKKWRCSKDKYPDSKYCERHMHRGRNRSRKPVES 113
                               79****************************************986 PP
2QLQ65.31.5e-222257237
                       QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                              +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i++
  Niben101Scf01437g03008.1 22 PFTAVQWQELEHQAMIYKYLVAGLPVPPDLVVPIRR 57
                              9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.9E-132157IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.3432257IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.9E-172256IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.22569113IPR014977WRC domain
PfamPF088793.4E-2070112IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSGSTSTSVV GGGGYGYGYR PPFTAVQWQE LEHQAMIYKY LVAGLPVPPD LVVPIRRMGY  60
CSYYGKKFDP EPGRCRRTDG KKWRCSKDKY PDSKYCERHM HRGRNRSRKP VESQSASQSL  120
STSMSHITTG SSNTRGSFQS SSSGSFQHMP LYSVANSEEL NYGSSATKLQ MEHVSYGIDT  180
KDYRYLHGIA PDADEYNLSL ETSATVRNLG MGTTMVRTWV LPSQVSSSPA ARPXTMDSTW  240
VLPSQVSSSP AARPKNDSQL LGSSQQMHLP NLLEPMIDST ISKRRHQHCF FGSEIDSPGT  300
VKQEQQSMRP FFNEWPSAKE SWSNLDDEES NKNNFSTTQL SISIPMAPSD FSSGSACSPN  360
ASLLISLMLE GATAVKTQQS GAMQMNRHIC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605689.10.0PREDICTED: growth-regulating factor 4-like isoform X1
RefseqXP_009605690.10.0PREDICTED: growth-regulating factor 4-like isoform X2
RefseqXP_016481857.10.0PREDICTED: growth-regulating factor 4-like isoform X1
RefseqXP_016481858.10.0PREDICTED: growth-regulating factor 4-like isoform X1
RefseqXP_016481859.10.0PREDICTED: growth-regulating factor 4-like isoform X2
TrEMBLA0A1S4AYW50.0A0A1S4AYW5_TOBAC; growth-regulating factor 4-like isoform X1
TrEMBLA0A1S4AZ620.0A0A1S4AZ62_TOBAC; growth-regulating factor 4-like isoform X2
STRINGXP_009605688.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-43growth-regulating factor 5