PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01433g08031.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 1994aa    MW: 218902 Da    PI: 6.7219
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01433g08031.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.8e-0619711994226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                                ++++C+ f+++G Ck G++C + H+
  Niben101Scf01433g08031.1 1971 GQRICK-FYESGRCKKGSSCDYLHP 1994
                                6899**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.11E-886158IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.109.6E-9107166IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.564111177IPR019787Zinc finger, PHD-finger
SMARTSM002493.1E-7113159IPR001965Zinc finger, PHD-type
CDDcd155681.59E-19113158No hitNo description
PROSITE patternPS013590114174IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475921.22E-19366443IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.104.0E-25367450IPR003121SWIB/MDM2 domain
SMARTSM001513.8E-4369447IPR019835SWIB domain
PfamPF022019.7E-14369442IPR003121SWIB/MDM2 domain
PROSITE profilePS5136022.224500633IPR004343Plus-3 domain
SMARTSM007195.2E-35500610IPR004343Plus-3 domain
SuperFamilySSF1590425.23E-27501629IPR004343Plus-3 domain
PfamPF031268.5E-20505608IPR004343Plus-3 domain
SuperFamilySSF552771.28E-14807871IPR003169GYF domain
CDDcd000725.95E-15819875No hitNo description
PROSITE profilePS5082914.377819872IPR003169GYF domain
SMARTSM004441.4E-10820874IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.9E-14821872IPR003169GYF domain
PfamPF022132.2E-9822863IPR003169GYF domain
SuperFamilySSF552771.28E-1411971261IPR003169GYF domain
CDDcd000725.95E-1512091265No hitNo description
PROSITE profilePS5082914.37712091262IPR003169GYF domain
SMARTSM004441.4E-1012101264IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.9E-1412111262IPR003169GYF domain
PfamPF022132.2E-912121253IPR003169GYF domain
SuperFamilySSF902298.44E-619691993IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61919691994IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-419731993IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1994 aa     Download sequence    Send to blast
MDGGGNSSSE LYRPCVQQAH SLSFDGSTVT SMGLQGSEQC SSVKYMDNFQ LVGVPAAVTG  60
GAPITVAVDG RTSVADVIGD GVEKRKRGRP PRFHTTVAKP PPAKKPREED EDVCFICFDG  120
GSLVLCDRKG CPKAYHPACI KRDEAFFRSK AKWNCGWHIC SVCQKASHYL CYTCTYSLCK  180
ACTKNADYLC VRGNKGFCST CMRTIMLIEN KDQANKEMVQ VDFDDKSSWE YLFKVYWVIL  240
KEKLSLTLDE LLQAKNPWKE SDAVHGKRQL MPYSRYVAID GKSIAGKSFD YIEQKKSIEP  300
LELSKRDPPT AEIRAASDSG NASILSSTPL LELTKPVQEL KVQNEDCLRS KQESTFAETS  360
LNGCMEWASK ELLDFVAHVK DGDTSAISQF DVQALLLDYI KRNNLRDPRR KSQIICDLRL  420
KSLFGKPRVG HIEMLKLLEF HFLIKEESKK SAFIPAGIVG TMTSHVEPDD SNDISSSKKR  480
RTRKNGEVKM TQINLDEYAA IDAHNVNFIY LRRDLMETLA EDVEKFHARA IGSVVRIRIP  540
GNDQKQEIYR LVHVVGTSKS SEPYKIRDKT VDVLLEVLNL DKKEALSIDS ISNQEFCEDE  600
CRRLRQSIKC GLVKRLTVGE IQKKALELRA VKLNDSLEAE MLRLNHLRDR ASEKGHKKEY  660
PLSKQYNIDL EHEDFLDNST LRECIEKLEL LKTPEERQRR LLEIPEVHAE PKMDPDYESE  720
GDDGGFNYKR KVEYLAPRCT RISRRDEKLM SSGSLAKEEG SIMARCRMSE KREACGSNIL  780
DKLGNRLTAE QAVDRSGSET SIASLSMVNS SSANSIETDK LWHYRDPAGR IQGPFSVMQL  840
RKWNTSGLFP PEMRIWTNHE HDDSILLTNA LKGLFHKEPQ VHGKTSSQSR EPAASDSRTS  900
VRWSETAGRE APRHPHKANY HSNGNTEFTR MNGLFPSSPQ CLDSLKGNSS CSDKPQLSSP  960
VPPSSQREVI LALPRQERGN ANDNCRPATD HGTQNSRGSV MCQINDGCGH NTESYSRNLG  1020
SSLAQNPGSF TSNRYTINLD SGSRFASATK SSDSFEQKGN MSLPDLPSPT PETSYEKLEL  1080
LKTPEERQRR LLEIPEVHAE PKMDPDYESE GDDGGFNYKR KVEYLAPRCT RISRRDEKLM  1140
SSGSLAKEEG SIMARCRMSE KREACGSNIL DKLGNRLTAE QAVDRSGSET SIASLSMVNS  1200
SSANSIETDK LWHYRDPAGR IQGPFSVMQL RKWNTSGLFP PEMRIWTNHE HDDSILLTNA  1260
LKGLFHKEPQ VHGKTSSQSR EPAASDSRTS VRWSEIATGS GGECGKREVP GHPHKANYHS  1320
NGNTEFTRMN GLSPSSPQCL DSLKGNSSCS DKPQLSNPVP PSSQREVILA LPRQERGNAN  1380
DNCRPATDHG TQNSRGSVMC QINDGCGHNT ESYSRNLGSS LAQNPGSFTS NRYTINLDSG  1440
SRFASATKSS DSFEQKGNMS LPDLPSPTPE TSYGELEAQA AEKLLLLSSV IPVCGSDNHD  1500
LPSPTPISDR ETQGGHAAEN KESVPSGLPV QESGHKWSSA SSSVVGGVHL REIADGCGRS  1560
SPAAKPSIEE WDSGIISASV SASSQKPAEA VGNNVATPMS NANQLTAKPS TEEWDSGIVS  1620
SSSQKPTEAV GNHFASPTSN ADQLTAKPST TEEWDSGLVS VSSTKPAEAV EWDSGLVSVS  1680
STKPAEAVGD HVATPTSNAD QLTHTSPSHP VSNFFGEPIE FSTLAEESVS DLLAEVDAME  1740
SQNQNNMGSP TSAMRCGEEM IPGCRNDCFS PIEELSPTHD PVRSDALSST GDLQLPCQST  1800
MTDERVGASR ADVFDPLRRS GGNSSTSSEG ETKSNDVLFS QGDAGSNIPC TISQTTAFSA  1860
MGRNTGLEGM TSGRGAAPGN PIWVGAVQGY ANVGFSCSMG AAWGNSHMNR GAPFTGNPVW  1920
DSQRRYAGER SGGLREWALQ GGESGFGRGR SSWNRQQPYG GGGYSRPPPK GQRICKFYES  1980
GRCKKGSSCD YLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A6e-14105180981Histone-lysine N-methyltransferase NSD3
4gnd_C6e-14105180981Histone-lysine N-methyltransferase NSD3
4gne_A6e-14105180981Histone-lysine N-methyltransferase NSD3
4gnf_A6e-14105180981Histone-lysine N-methyltransferase NSD3
4gng_A6e-14105180981Histone-lysine N-methyltransferase NSD3
4gng_D6e-14105180981Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474357.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X3
TrEMBLA0A314KV680.0A0A314KV68_NICAT; Zinc finger ccch domain-containing protein 19
STRINGXP_009789365.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21811516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding