PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01433g03011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 271aa    MW: 31497 Da    PI: 10.3252
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01433g03011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.55.6e-26959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              k+ien++nrqvt+skRrngi+KKA+EL vLCda+++++++sst k++ey s
  Niben101Scf01433g03011.1  9 KKIENSTNRQVTYSKRRNGIIKKAKELTVLCDAKISLLMLSSTRKFHEYTS 59
                              68***********************************************75 PP
2SRF-TF66.62.4e-2163105951
                               HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF   9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                qvt+skRrngi+KKA+EL vLCda+++++++sst k++ey s
  Niben101Scf01433g03011.1  63 TQVTYSKRRNGIIKKAKELTVLCDAKISLLMLSSTRKFHEYTS 105
                               59***************************************75 PP
3K-box81.42e-27117214198
                     K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                               yq++ g++ +++++e++q++l++Lk+ +++L+re+R++ Ged++ L+l+eL +L++++ +s+ +iR++K++++++q+++ +kk k
  Niben101Scf01433g03011.1 117 YQRTLGVDIWSTHYERMQENLKRLKEINNKLRREIRQRTGEDMSGLNLQELCRLQENISESVAEIRERKYHVIKTQTDTFKKKVK 201
                               67788899***************************************************************************** PP

                     K-box  86 elqeenkaLrkkl 98 
                               +l+e++ +L   l
  Niben101Scf01433g03011.1 202 NLEEQHGNLVLDL 214
                               ******9997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.427161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-36160IPR002100Transcription factor, MADS-box
CDDcd002656.29E-33265No hitNo description
SuperFamilySSF554557.72E-28263IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-201057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-253859IPR002100Transcription factor, MADS-box
SMARTSM004324.5E-1561106IPR002100Transcription factor, MADS-box
PfamPF003193.1E-1661103IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-2663141IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.02564107IPR002100Transcription factor, MADS-box
PfamPF014862.6E-19128211IPR002487Transcription factor, K-box
PROSITE profilePS5129715.037130220IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRGKIEIKK IENSTNRQVT YSKRRNGIIK KAKELTVLCD AKISLLMLSS TRKFHEYTSP  60
NTTQVTYSKR RNGIIKKAKE LTVLCDAKIS LLMLSSTRKF HEYTSPNTTQ KKMIDQYQRT  120
LGVDIWSTHY ERMQENLKRL KEINNKLRRE IRQRTGEDMS GLNLQELCRL QENISESVAE  180
IRERKYHVIK TQTDTFKKKV KNLEEQHGNL VLDLEAKSED PKYGTVENEG QYNSAMAFAN  240
GVHNHYAFRL QSLHPNLQNG GEYGSRNLRL A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-15165165MEF2C
5f28_B6e-15165165MEF2C
5f28_C6e-15165165MEF2C
5f28_D6e-15165165MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230009.11e-151PREDICTED: floral homeotic protein DEFICIENS-like
SwissprotQ003J21e-109TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A1S4AYJ91e-148A0A1S4AYJ9_TOBAC; floral homeotic protein DEFICIENS-like
STRINGXP_009605879.11e-150(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-62MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]