PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01430g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 259aa    MW: 29270.4 Da    PI: 5.4989
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01430g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-1977126356
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+G+r+++ +g+W+AeIrdp++     r++lg++ taeeAa+a+++ ++k++ge
  Niben101Scf01430g00007.1  77 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNTAEEAARAYDKEARKIRGE 126
                               9*******.**********954...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-2276134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-3276134IPR001471AP2/ERF domain
SMARTSM003804.4E-3776139IPR001471AP2/ERF domain
PROSITE profilePS5103223.68376133IPR001471AP2/ERF domain
CDDcd000184.82E-3277134No hitNo description
PfamPF008471.8E-1277126IPR001471AP2/ERF domain
PRINTSPR003671.3E-117788IPR001471AP2/ERF domain
PRINTSPR003671.3E-1199115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MCGGAILADL IPRRDHRASS TDLWPNSADF WPSSSFAKPI NSRVSYQNVT ATQKRVQPST  60
GNEQIQKTKK RQRKNLYRGI RQRPWGKWAA EIRDPRKGVR VWLGTYNTAE EAARAYDKEA  120
RKIRGEKAKV NFPNEDDRYI TAYESYDTSY NHESYNCDGS FCSLVDQNTE PGMEYPLAYK  180
NSSASVYNGS EEQKAENEVE KLTEELMACE SLMKFYEIPY FDGQSVATVN PAGEAVVGGG  240
SIDLWSFDDV SPTVPITQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-21771351574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608570.11e-166PREDICTED: ethylene-responsive transcription factor ERF071 isoform X1
TrEMBLA0A1S4AGK01e-159A0A1S4AGK0_TOBAC; ethylene-responsive transcription factor ERF071
STRINGXP_009608570.11e-166(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-46ERF family protein