PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01409g02004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 427aa    MW: 48704.7 Da    PI: 8.7226
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01409g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.2e-1564112148
                               TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl
  Niben101Scf01409g02004.1  64 KGPWSPEEDAKLKAYIEENGTGnNWIALPQKLGLKRCGKSCRLRWLNYL 112
                               79*********************************************97 PP
2Myb_DNA-binding38.62.5e-12119161246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               g +T+eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Niben101Scf01409g02004.1 119 GGFTEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 161
                               569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1959112IPR017930Myb domain
SuperFamilySSF466893.51E-2661159IPR009057Homeodomain-like
SMARTSM007171.2E-1263114IPR001005SANT/Myb domain
PfamPF002491.0E-1464112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2465119IPR009057Homeodomain-like
CDDcd001671.30E-866112No hitNo description
PROSITE profilePS5129422.109113167IPR017930Myb domain
SMARTSM007172.3E-11117165IPR001005SANT/Myb domain
PfamPF002497.6E-11119161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-23120167IPR009057Homeodomain-like
CDDcd001671.77E-7121161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
LHHPLISTYK TKSSLPIFFK PTIYKFKNQR FERRNIWKQN SSEEKKLKIN MGRAPCCDKN  60
NVKKGPWSPE EDAKLKAYIE ENGTGNNWIA LPQKLGLKRC GKSCRLRWLN YLRPNIKHGG  120
FTEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK RKQSQMNRLL  180
LASSGQDLKE TNGLEENSLL QNLSNSALER LQLHMQLQTL QNPLSFYNNP TLWPKLTPLQ  240
QKMIQTLQGN GINENQSPIY APINPSDHNQ AHELGQKVVI NEFANTMTNF KANEVEKSTT  300
NNGISSSDST PIESNSQRSV LDKNIGQEDT REIQIQIQGV QGFTQAEIDD LILNKGIGFN  360
LPSQNHQIAE FDCFKEMDDG SRDNLAWWSN EFDTNTASSS NSWGSSSNIL QQTEGMYQDY  420
ALGYNLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-23641677108B-MYB
1h8a_C1e-226416727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256630.10.0PREDICTED: transcription factor MYB36
SwissprotQ9FKL21e-101MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A1J6HYH80.0A0A1J6HYH8_NICAT; Transcription factor myb36
STRINGXP_009804259.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.19e-88myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]