PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01406g03020.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 364aa MW: 39635.8 Da PI: 5.074

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01406g03020.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	51	96	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v +G ++W++Iar ++ gR++k+c++rw + Niben101Scf01406g03020.1 51 KGPWSPEEDAILSRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 96 79****************************.*********985 PP
2	Myb_DNA-binding	55.8	1e-17	103	147	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++++ eEd ++++a++ +G++ W++Iar ++ gRt++ +k++w++ Niben101Scf01406g03020.1 103 RKPFSDEEDRIILQAHAVHGNK-WASIARLLP-GRTDNAIKNHWNST 147 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.332	46	97	IPR017930	Myb domain
SuperFamily	SSF46689	2.05E-30	48	144	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-15	50	99	IPR001005	SANT/Myb domain
Pfam	PF00249	9.0E-17	51	96	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-26	52	104	IPR009057	Homeodomain-like
CDD	cd00167	4.96E-14	53	95	No hit	No description
PROSITE profile	PS51294	27.321	98	152	IPR017930	Myb domain
SMART	SM00717	5.1E-17	102	150	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-15	103	147	IPR001005	SANT/Myb domain
CDD	cd00167	8.72E-13	105	148	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.4E-24	105	151	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MENNILENLE GYYGGGSGDA GGSVGGDDEE ALVLEDGSGS SDRKKTADRV KGPWSPEEDA 60 ILSRLVSNFG ARNWSLIARG IPGRSGKSCR LRWCNQLDPA VKRKPFSDEE DRIILQAHAV 120 HGNKWASIAR LLPGRTDNAI KNHWNSTLRR RCSELGKLRS DSSNVLEDVS AEKSKASSEE 180 TQSCGDVNSL KAIEGKDVSS QENQEDNYYE DKTHEEVQRS DVANDPPILF RPVARISAFS 240 VYGSLNAPET LVQTPRLTPI QVPDFGVSKL LEGAFTDRLV PHQCGHGCCG NASQENNRSS 300 LLGPEFVDYT EAPSFSSHEL ATLATEISNV AWCKSGLENS SIEVIFNPAT RGTCGTSHLP 360 SRPF

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MENNILENLE GYYGGGSGDA GGSVGGDDEE ALVLEDGSGS SDRKKTADRV KGPWSPEEDA  60
ILSRLVSNFG ARNWSLIARG IPGRSGKSCR LRWCNQLDPA VKRKPFSDEE DRIILQAHAV  120
HGNKWASIAR LLPGRTDNAI KNHWNSTLRR RCSELGKLRS DSSNVLEDVS AEKSKASSEE  180
TQSCGDVNSL KAIEGKDVSS QENQEDNYYE DKTHEEVQRS DVANDPPILF RPVARISAFS  240
VYGSLNAPET LVQTPRLTPI QVPDFGVSKL LEGAFTDRLV PHQCGHGCCG NASQENNRSS  300
LLGPEFVDYT EAPSFSSHEL ATLATEISNV AWCKSGLENS SIEVIFNPAT RGTCGTSHLP  360
SRPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-41	48	151	4	107	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783755.1	0.0	PREDICTED: myb-related protein B-like
Refseq	XP_016483070.1	0.0	PREDICTED: myb-related protein B-like
Swissprot	Q42575	1e-95	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A1S4B2A4	0.0	A0A1S4B2A4_TOBAC; myb-related protein B-like
TrEMBL	A0A1U7XBC2	0.0	A0A1U7XBC2_NICSY; myb-related protein B-like
STRING	XP_009783755.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2611	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	8e-95	myb domain protein 1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]