PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01394g03007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 310aa    MW: 35473.9 Da    PI: 8.0601
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01394g03007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.1e-185299148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WT+eEde+l++++++ G g+W+t +++ g+ R++k+c++rw +yl
  Niben101Scf01394g03007.1 52 RGPWTPEEDEILKNYINKEGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 99
                              89******************************99************97 PP
2Myb_DNA-binding49.78.5e-16105150148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg  +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Niben101Scf01394g03007.1 105 RGHISPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 150
                               67779*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-2343102IPR009057Homeodomain-like
PROSITE profilePS5129417.0554799IPR017930Myb domain
SuperFamilySSF466891.47E-2949146IPR009057Homeodomain-like
SMARTSM007177.6E-1451101IPR001005SANT/Myb domain
PfamPF002492.1E-155299IPR001005SANT/Myb domain
CDDcd001672.44E-115499No hitNo description
PROSITE profilePS5129425.247100154IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.2E-25103155IPR009057Homeodomain-like
SMARTSM007173.8E-15104152IPR001005SANT/Myb domain
PfamPF002491.2E-14105150IPR001005SANT/Myb domain
CDDcd001671.01E-11109150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MQPTVKNSSP FLSHLSKLKT ENFTKRNQRK MRTPTSSKTK VTPCCSKVGL KRGPWTPEED  60
EILKNYINKE GEGRWRTLPK KAGLLRCGKS CRLRWMNYLR PSVKRGHISP DEEDLILRLH  120
RLLGNRWSLI AGRIPGRTDN EIKNYWNTHL SKKLISQGID PRTHKPLINH NCSSDDQITS  180
KASSSSPSSS SKLANDFNTI PNPIYIPFQM EEPLRSININ HLGEITSLDD YQYQSNAILV  240
NYDNDLNIVV EEDDEMNCCT DDVFSSFLNS LINEDMFNSQ NQQITNGMFP DFDPLVTPTQ  300
DNQNNQQESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24501545108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231335.10.0PREDICTED: transcription repressor MYB5-like
SwissprotQ388508e-84MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A314KI290.0A0A314KI29_NICAT; Transcription repressor myb5
STRINGXP_009607844.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.18e-86myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]