PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01383g07027.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 537aa    MW: 59675.7 Da    PI: 8.871
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01383g07027.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-17105152148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+WT+eEd  l d+++++G g+W+t+ ++ g+ R++k+c++rw ++l
  Niben101Scf01383g07027.1 105 KGPWTKEEDAVLMDYIRKHGEGNWSTVQKHSGLARCGKSCRLRWANHL 152
                               79******************************************9986 PP
2Myb_DNA-binding42.91.1e-13158201146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +g+ T+eE  ++ ++++++G++ W+ Ia++++ gRt++++k++w++
  Niben101Scf01383g07027.1 158 KGALTPEEVRRINELHAKMGNK-WAQIAAKLP-GRTDNEIKNYWNT 201
                               6788******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.85100156IPR017930Myb domain
SuperFamilySSF466891.31E-29102199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-24103155IPR009057Homeodomain-like
SMARTSM007171.3E-13104154IPR001005SANT/Myb domain
PfamPF002494.6E-15105152IPR001005SANT/Myb domain
CDDcd001671.75E-11107152No hitNo description
Gene3DG3DSA:1.10.10.603.6E-23156206IPR009057Homeodomain-like
PROSITE profilePS5129419.822157207IPR017930Myb domain
SMARTSM007174.3E-13157205IPR001005SANT/Myb domain
PfamPF002492.0E-12158201IPR001005SANT/Myb domain
CDDcd001675.38E-10162201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MKKLLIVFKD SHVRSTWHKH VLMDSKLPGF SFAFSPGLIT QKHKGTDPRL FAARLCGQLI  60
QLKSSDMCMT SECVDRMTSK VGVCSPFVEE ASGGGNTRRG VPLKKGPWTK EEDAVLMDYI  120
RKHGEGNWST VQKHSGLARC GKSCRLRWAN HLRPDLKKGA LTPEEVRRIN ELHAKMGNKW  180
AQIAAKLPGR TDNEIKNYWN TRIKKRRCVG LQIYPPDICF QAFSENKQNN ELGIFSSANS  240
HPDFLPINGF EIPTVEFKKL EPSQQLYPRA LVNIAASSFF DIPATSLLAQ ALSSSNTCSG  300
LSTMHPSKLI RGSESWFFGM TDDLFQACHQ YQNNSSLFAQ SLGFSSSYTH NLTSDHHPSF  360
SGEIPGSHAP LNGNSSSSEL KWAKKLELPS LQIQMANWGS PSPLPSLESF DTLIQYPPNE  420
HTVSGSLSPR NSGLLDAVLY ESQTSKASKH NSHQETSCDV VDDSCPDLQE TQWGTYSNPI  480
SPLGHSAASV LSEYTPTEVK QKKVELVIKP PGLQQGLHQM LKFETDQAKV QFIRAKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-321002061107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771204.10.0PREDICTED: transcription factor GAMYB-like isoform X1
TrEMBLA0A1U7W9710.0A0A1U7W971_NICSY; transcription factor GAMYB-like isoform X1
STRINGXP_009771204.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.17e-72myb domain protein 65