PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01378g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 658aa    MW: 72729.9 Da    PI: 9.5096
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01378g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07560608247
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Niben101Scf01378g00002.1 560 RPFSVFEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 608
                               56777799*****************9776668**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.65E-9360451IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.908.6E-4363436No hitNo description
PROSITE profilePS5129413.527554613IPR017930Myb domain
SMARTSM007173.5E-6558611IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-10559609IPR009057Homeodomain-like
CDDcd116601.47E-16560610No hitNo description
SuperFamilySSF466893.12E-15560641IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MVLHKRLDYG FNGYQVPPIP RATRSARGRG NIRKKSDGNE MCAFDLLTTV AGKLLLEGES  60
TPNSTNTVKE DEDTSLKENL YNEGIRERGF FISPIVSEAP VVNHCLSKSK DMLSGQASVI  120
TSSGCSEKLD SAERFINCES KNETGNCSTK AEQEASGCGD FSSCTLGAES KRKMKIDLSN  180
DAKIFGSEFP DLWDRKPTNL VASDNTVKLS LSTDPVPFGS FPVIQNDVKL TNKDDDENYC  240
GYAQPSTRNK AFRPKPRVGK FRMRKLSDVK PKFEDADSET RHVYSRKNDY MSGRSQRDFP  300
FKKRKLYYCN SFSDSDGGSS DRICSSPTKD LNRDDAGYSL VSSGARAAVG TSISSGARTS  360
SDSHVKLKIK SFRVPELFFE IPENATVGSL KRTVMEAVTA ILGGGLHIGV VFQGKKVRDD  420
NKTLLQAGIS HDDKLDALGF TLEPKPSRAS SALGPESHSR VLPCDTPQSL TRGPPTPTVI  480
CNGIRQGTYN AFSDHPETNL NNFVESDHDS APSPPDASLE KDAADSRALV PVAAVNAEAL  540
AAVRMRKPKR SDSVQRRIRR PFSVFEVEAL VQAVEKLGTG RWRDVKMRAF DNAKHRTYVD  600
LKDKWKTLVH TARISPQQRR GVPVPQELLD RVLIAHGYWS QKQAKLHTKH QSETRLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-525466494107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295304QRDFPFKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232923.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLA0A1J6JID70.0A0A1J6JID7_NICAT; Telomere repeat-binding protein 5
STRINGXP_009792985.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-133TRF-like 2