PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01378g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 658aa MW: 72729.9 Da PI: 9.5096 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22 | 3.9e-07 | 560 | 608 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Niben101Scf01378g00002.1 560 RPFSVFEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 608 56777799*****************9776668**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 2.65E-9 | 360 | 451 | IPR029071 | Ubiquitin-related domain |
Gene3D | G3DSA:3.10.20.90 | 8.6E-4 | 363 | 436 | No hit | No description |
PROSITE profile | PS51294 | 13.527 | 554 | 613 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-6 | 558 | 611 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-10 | 559 | 609 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.47E-16 | 560 | 610 | No hit | No description |
SuperFamily | SSF46689 | 3.12E-15 | 560 | 641 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MVLHKRLDYG FNGYQVPPIP RATRSARGRG NIRKKSDGNE MCAFDLLTTV AGKLLLEGES 60 TPNSTNTVKE DEDTSLKENL YNEGIRERGF FISPIVSEAP VVNHCLSKSK DMLSGQASVI 120 TSSGCSEKLD SAERFINCES KNETGNCSTK AEQEASGCGD FSSCTLGAES KRKMKIDLSN 180 DAKIFGSEFP DLWDRKPTNL VASDNTVKLS LSTDPVPFGS FPVIQNDVKL TNKDDDENYC 240 GYAQPSTRNK AFRPKPRVGK FRMRKLSDVK PKFEDADSET RHVYSRKNDY MSGRSQRDFP 300 FKKRKLYYCN SFSDSDGGSS DRICSSPTKD LNRDDAGYSL VSSGARAAVG TSISSGARTS 360 SDSHVKLKIK SFRVPELFFE IPENATVGSL KRTVMEAVTA ILGGGLHIGV VFQGKKVRDD 420 NKTLLQAGIS HDDKLDALGF TLEPKPSRAS SALGPESHSR VLPCDTPQSL TRGPPTPTVI 480 CNGIRQGTYN AFSDHPETNL NNFVESDHDS APSPPDASLE KDAADSRALV PVAAVNAEAL 540 AAVRMRKPKR SDSVQRRIRR PFSVFEVEAL VQAVEKLGTG RWRDVKMRAF DNAKHRTYVD 600 LKDKWKTLVH TARISPQQRR GVPVPQELLD RVLIAHGYWS QKQAKLHTKH QSETRLLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 3e-52 | 546 | 649 | 4 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 295 | 304 | QRDFPFKKRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019232923.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like | ||||
TrEMBL | A0A1J6JID7 | 0.0 | A0A1J6JID7_NICAT; Telomere repeat-binding protein 5 | ||||
STRING | XP_009792985.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3076 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-133 | TRF-like 2 |