PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01374g07001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 843aa MW: 92712.2 Da PI: 6.4663

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01374g07001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.2e-19	17	75	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Niben101Scf01374g07001.1 17 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75 5679*****************************************************97 PP
2	START	172.6	2.6e-54	161	369	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEEC CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevis 86 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d + W ++++++++l+v+ Niben101Scf01374g07001.1 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEILKDCPSWFRDCRAVDVLNVLP 244 789*****************************************************.9999999999************ PP TT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEE CS START 87 sg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvt 165 ++ g+++l +++l+a+++l+p Rdf+ +Ry+ + +g++v++++S+ ++q+ p+ +++vRae lpSg+li+p+++g+s ++ Niben101Scf01374g07001.1 245 TAngGTIELLYMQLYAPTTLAPaRDFWLLRYTTVMDDGSLVVCERSLGNTQNGPSmppVQNFVRAEILPSGYLIRPCEGGGSIIH 329 9999********************************************99988899********************* PP EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +v+h++l++++++++lr+l++s+++ ++kt+va+l+++++ Niben101Scf01374g07001.1 330 IVDHMNLESWSVPEVLRPLYESSIVLAQKTTVAALRYLRQ 369 *********************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.516	12	76	IPR001356	Homeobox domain
SMART	SM00389	5.2E-16	14	80	IPR001356	Homeobox domain
CDD	cd00086	8.06E-17	17	77	No hit	No description
SuperFamily	SSF46689	8.98E-17	17	80	IPR009057	Homeodomain-like
Pfam	PF00046	2.2E-16	18	75	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.1E-18	19	75	IPR009057	Homeodomain-like
CDD	cd14686	1.15E-6	69	108	No hit	No description
PROSITE profile	PS50848	25.437	151	379	IPR002913	START domain
CDD	cd08875	5.89E-75	155	371	No hit	No description
SuperFamily	SSF55961	9.06E-37	160	372	No hit	No description
Gene3D	G3DSA:3.30.530.20	1.7E-22	160	365	IPR023393	START-like domain
SMART	SM00234	7.7E-42	160	370	IPR002913	START domain
Pfam	PF01852	5.2E-52	161	369	IPR002913	START domain
Pfam	PF08670	1.5E-49	700	842	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence Send to blast
MASCKDGKTS SVMDNGKYVR YTPEQVEALE RLYHDCPKPS SMRRQQLIRE CPILSNIEPK 60 QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRRQ 120 THSTTLATKD TSCESVVTSG QHHLTSQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW 180 VQMPGMKPGP DSIGIIAISH GCTGVAARAC GLVGLEPTRV AEILKDCPSW FRDCRAVDVL 240 NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTTVMD DGSLVVCERS LGNTQNGPSM 300 PPVQNFVRAE ILPSGYLIRP CEGGGSIIHI VDHMNLESWS VPEVLRPLYE SSIVLAQKTT 360 VAALRYLRQI AQEVSQTNVT NWGRRPAALR ALSQRLSRGF NEALNGLTDE GWSMLGSDGM 420 DDITILVNSS PDKLMGLNLS FANGFSSLSN AIMCAKASML LQNVPPAILL RFLREHRSEW 480 ADNNIDAYSA AAIKVGPCCL PGTRVGNFGG QVILPLAHTV EHEEASLVDL LEVIKLEGVG 540 HSPEDAIMPR DMFLLQLCSG MDENAVGTSA ELIFAPIDAS FADDAPLLPS GFRIISLESG 600 KESSSRNRTL DLTSALETGP AENKVGNDLH TNGGTSRSVM TIAFQFAFES HMQENVASMA 660 RQYVRSIISS VQRVALALSP SHLGSHGGLR LPLGTPEAHT LARWICQSYR CFLGVELLKS 720 IAEGSESILK SLWHHSDAII CCSAKAMPVF TFANQAGLDM LETTLVALQD ITLEKIFDDH 780 GKKNLCTEFP QIMQQGFACL QGGICLSSMS RPISYERAVA WKAMNEEDSP HCICFMFVNW 840 SFV

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence Send to blast

MASCKDGKTS SVMDNGKYVR YTPEQVEALE RLYHDCPKPS SMRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRRQ  120
THSTTLATKD TSCESVVTSG QHHLTSQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIIAISH GCTGVAARAC GLVGLEPTRV AEILKDCPSW FRDCRAVDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTTVMD DGSLVVCERS LGNTQNGPSM  300
PPVQNFVRAE ILPSGYLIRP CEGGGSIIHI VDHMNLESWS VPEVLRPLYE SSIVLAQKTT  360
VAALRYLRQI AQEVSQTNVT NWGRRPAALR ALSQRLSRGF NEALNGLTDE GWSMLGSDGM  420
DDITILVNSS PDKLMGLNLS FANGFSSLSN AIMCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNIDAYSA AAIKVGPCCL PGTRVGNFGG QVILPLAHTV EHEEASLVDL LEVIKLEGVG  540
HSPEDAIMPR DMFLLQLCSG MDENAVGTSA ELIFAPIDAS FADDAPLLPS GFRIISLESG  600
KESSSRNRTL DLTSALETGP AENKVGNDLH TNGGTSRSVM TIAFQFAFES HMQENVASMA  660
RQYVRSIISS VQRVALALSP SHLGSHGGLR LPLGTPEAHT LARWICQSYR CFLGVELLKS  720
IAEGSESILK SLWHHSDAII CCSAKAMPVF TFANQAGLDM LETTLVALQD ITLEKIFDDH  780
GKKNLCTEFP QIMQQGFACL QGGICLSSMS RPISYERAVA WKAMNEEDSP HCICFMFVNW  840
SFV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019267274.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A314KZL5	0.0	A0A314KZL5_NICAT; Homeobox-leucine zipper protein athb-15
STRING	XP_009774805.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA457	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]