PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01372g06020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 195aa MW: 22304.7 Da PI: 9.5275 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 96.8 | 1.7e-30 | 2 | 57 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 v+YkeClkNhA+++Gg+a+DGCgEfmps geegt + l+C+ C+CHRnFHR+e+e e Niben101Scf01372g06020.1 2 VKYKECLKNHAVAMGGNATDGCGEFMPS-GEEGTLELLTCSVCNCHRNFHRKETEGE 57 79*************************9.999*********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-25 | 2 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.6E-28 | 2 | 54 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.2E-30 | 3 | 53 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.311 | 4 | 53 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.79E-17 | 114 | 183 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-27 | 117 | 184 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.3E-25 | 122 | 178 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MVKYKECLKN HAVAMGGNAT DGCGEFMPSG EEGTLELLTC SVCNCHRNFH RKETEGELIR 60 NVYVGHPHKA FVYPTSRAAP HQMIMSYNNH MGPIPGINQE DGIINVGCGA MVRPLNHQQF 120 VKKRFRTKFS QEQKEKMLNF AEKIGWKMQK QEEAMVQQFC QQVGIKRRLL MVWMHNNKHN 180 LAKKNSNGIN TESQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-21 | 123 | 180 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009762039.1 | 1e-128 | PREDICTED: zinc-finger homeodomain protein 4-like isoform X1 | ||||
Refseq | XP_016437760.1 | 1e-128 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 2e-69 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A1S3XCV1 | 1e-126 | A0A1S3XCV1_TOBAC; zinc-finger homeodomain protein 4-like | ||||
TrEMBL | A0A1U7VI87 | 1e-126 | A0A1U7VI87_NICSY; zinc-finger homeodomain protein 4-like isoform X1 | ||||
STRING | XP_009762039.1 | 1e-127 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5154 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 1e-71 | homeobox protein 31 |