PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01362g03006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 282aa    MW: 32159.8 Da    PI: 5.8758
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01362g03006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.32.4e-1789142356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k+++++ eq+++Le+ Fe+ +++  e++ +LA+ lgL+ rq+ +WFqNrRa+ k
  Niben101Scf01362g03006.1  89 KKRRLNLEQVKALERSFEMGNKLEPERKMQLARVLGLKPRQIAIWFQNRRARCK 142
                               4557899*********************************************99 PP
2HD-ZIP_I/II127.55.5e-4188179192
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               ekkrrl+ eqvk+LE+sFe+ +kLeperK++lar Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L+++++
  Niben101Scf01362g03006.1  88 EKKRRLNLEQVKALERSFEMGNKLEPERKMQLARVLGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKADNDALKTQNK 172
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelk 92 
                               +L++el+
  Niben101Scf01362g03006.1 173 KLHSELQ 179
                               ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-1886146IPR009057Homeodomain-like
SMARTSM003891.2E-1787148IPR001356Homeobox domain
PROSITE profilePS5007116.01888144IPR001356Homeobox domain
CDDcd000861.48E-1589145No hitNo description
PfamPF000461.6E-1489142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-1891151IPR009057Homeodomain-like
PRINTSPR000312.8E-5115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000312.8E-5124140IPR000047Helix-turn-helix motif
PfamPF021839.8E-15144182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MLFSSTDTMA FAPETNISVD FRNHEAANDD LPSSFPTHVF PSSCPPHQEF QGISPLVMRR  60
AMSFDHNQES RVEDDMSDDD GSSHLLGEKK RRLNLEQVKA LERSFEMGNK LEPERKMQLA  120
RVLGLKPRQI AIWFQNRRAR CKTKQLEKDY EILKRQCDKL KADNDALKTQ NKKLHSELQL  180
LSLGNRESAG GTPAILFNLN KENEGCNWNN NGSGDENNST IDVNLGTTTR TSSTNSPLNN  240
HDVFPTAYKV DQTVNEEGFC NMFTNVEDQT NFWSLPVQQH FY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144RRARCKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258561.10.0PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X1
TrEMBLA0A314LFK70.0A0A314LFK7_NICAT; Homeobox-leucine zipper protein hat7
STRINGXP_009775432.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.16e-62homeobox 3