PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01350g07008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 449aa MW: 50881.9 Da PI: 8.4573 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.2 | 5.7e-20 | 141 | 189 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f taeeAa+a+++a+ +++g Niben101Scf01350g07008.1 141 YRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFVTAEEAARAYDRAAIEFRG 189 9*******.**********94....36************************998 PP | |||||||
2 | AP2 | 63.2 | 5.7e-20 | 315 | 363 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f taeeAa+a+++a+ +++g Niben101Scf01350g07008.1 315 YRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFVTAEEAARAYDRAAIEFRG 363 9*******.**********94....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-31 | 140 | 197 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.42E-33 | 140 | 196 | No hit | No description |
PROSITE profile | PS51032 | 24.671 | 140 | 197 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 140 | 198 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.8E-14 | 140 | 189 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-38 | 140 | 203 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 141 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 163 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 314 | 372 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-31 | 314 | 371 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-14 | 314 | 363 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.42E-33 | 314 | 370 | No hit | No description |
SMART | SM00380 | 5.2E-38 | 314 | 377 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.671 | 314 | 371 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MQSSTNIRLK QESTYDNHRH HLPPPRLTAE QEFSVMVEAL KNVITGNTTP IHSNSELNSF 60 GCIQNVISTP SFSSSPSTSM SSFEPPLLRF IDEPEPCNFC GIKGCLGCDY FGTTTTTDNN 120 NNNNKKTKKI SVVKKKKKNN YRGVRQRPWG KWAAEIRDPR KAARVWLGTF VTAEEAARAY 180 DRAAIEFRGP RAKLNFSFSD YTLIQEQSTP SSFPQNQQPE SQFEQGNADV KMEMSKLDND 240 FWDQLMGDNE IQRWLTIMDF SGGSSDFAEP CNFCGIKGCL GCDYFGTTTT TDNNNNNNKK 300 TKKISVVKKK KKNNYRGVRQ RPWGKWAAEI RDPRKAARVW LGTFVTAEEA ARAYDRAAIE 360 FRGPRAKLNF SFSDYTLIQE QSTPSSFPQN QQPESQFEQG NADVKMEMSK LDNDFWDQLM 420 GDNEIQRWLT IMDFSGGSSD FAGANVLSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-22 | 140 | 370 | 2 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-22 | 137 | 370 | 2 | 62 | ATERF1 |
3gcc_A | 5e-22 | 137 | 370 | 2 | 62 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016485767.1 | 1e-151 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 3e-31 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A1S4BA87 | 1e-150 | A0A1S4BA87_TOBAC; ethylene-responsive transcription factor ERF109-like | ||||
STRING | XP_009784619.1 | 1e-150 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 7e-26 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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