PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf01350g04013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 430aa MW: 47164.4 Da PI: 7.4675 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.3 | 2.8e-13 | 89 | 136 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er RR+++++ f++L llP++ +K +K++i+ +Av+YIk Lq Niben101Scf01350g04013.1 89 MHIWTERERRKKMRNMFSNLHALLPQL----PPKADKSTIVDEAVNYIKTLQ 136 56678*********************6....39******************9 PP | |||||||
2 | HLH | 12.2 | 0.00033 | 273 | 290 | 38 | 55 |
STCHHHHHHHHHHHHHHH CS HLH 38 lsKaeiLekAveYIksLq 55 +K++i+ +Av+YIk Lq Niben101Scf01350g04013.1 273 ADKSTIVDEAVNYIKTLQ 290 58***************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.157 | 85 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-16 | 85 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.89E-14 | 88 | 140 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.8E-15 | 88 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-10 | 90 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-9 | 93 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 2.75E-7 | 223 | 291 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.0E-6 | 224 | 296 | No hit | No description |
PROSITE profile | PS51671 | 9.66 | 227 | 318 | IPR002912 | ACT domain |
CDD | cd04873 | 4.01E-6 | 228 | 266 | No hit | No description |
SMART | SM00353 | 6.4 | 244 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 8.33E-6 | 377 | 425 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 2.7E-5 | 378 | 424 | No hit | No description |
PROSITE profile | PS51671 | 9.774 | 381 | 430 | IPR002912 | ACT domain |
CDD | cd04873 | 4.01E-6 | 382 | 420 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 430 aa Download sequence Send to blast |
MDEGGEDCFI WENQGWGFLN SDNSGGNEAK SSGTKLPDTS QLAVSDGFAR EIEMAGPSAG 60 RKRSANGVKV NGDVNEGKVN GGGESDHEMH IWTERERRKK MRNMFSNLHA LLPQLPPKAD 120 KSTIVDEAVN YIKTLQHTLQ KLQRQKLERL HGMATSMNPS IITSHKLSAD SIISREAFLA 180 DQGSTNNAAI SPTNNAANPI SMSHFPAVFQ SWTSPNVILN VCGEEAHISV CCPKKPGLLS 240 SICYVLEKHK IEVVSAQISS YDHRSMYMIQ AHADKSTIVD EAVNYIKTLQ HTLQKLQRQK 300 LERLHGMATS MNPSIITSHK LSADSIISRE AFLADQGSTN NAAISPTNNA ANPISMSHFP 360 AVFQSWTSPN VILNVCGEEA HISVCCPKKP GLLSSICYVL EKHKIEVVSA QISSYDHRSM 420 YMIQAHSLSI |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800782.1 | 0.0 | PREDICTED: transcription factor bHLH95-like | ||||
TrEMBL | A0A1U7Y9I3 | 0.0 | A0A1U7Y9I3_NICSY; transcription factor bHLH95-like | ||||
STRING | XP_009800782.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1324 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49770.1 | 3e-49 | bHLH family protein |