PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01341g03011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-PHD

Protein Properties

Length: 750aa MW: 82957.6 Da PI: 5.5484

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01341g03011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38	2.8e-12	576	625	6	55
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 t+ + +++L e F++n+yp+++++e+L k+ gLt qV+ WF N R + Niben101Scf01341g03011.1 576 TYGDGAIKRLYESFKENQYPDRNAKEKLGKEFGLTAHQVSKWFENARHCH 625 66677899**************************************9755 PP
2	PHD	38	3.9e-13	224	279	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C++ fH+ Cl+++l +e++p + wlC+ C++k Niben101Scf01341g03011.1 224 FCAKCGAkdLPADNDIILCDGaCERGFHQLCLEPPLLKEDIPPDdeGWLCPGCDCK 279 69999966566*****66***************99999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	2.44E-13	215	282	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	1.1E-12	221	279	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.95	222	279	IPR019787	Zinc finger, PHD-finger
Pfam	PF00628	1.2E-10	224	279	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	3.6E-9	224	277	IPR001965	Zinc finger, PHD-type
CDD	cd15504	2.33E-25	224	276	No hit	No description
PROSITE pattern	PS01359	0	225	276	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE profile	PS50071	13.297	568	628	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-12	570	622	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.99E-12	570	631	IPR009057	Homeodomain-like
SMART	SM00389	1.0E-10	571	632	IPR001356	Homeobox domain
CDD	cd00086	5.82E-10	573	629	No hit	No description
Pfam	PF00046	7.7E-10	575	626	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
MRPQLEDQTE MSTLGSTSVS PGKVARTTTR SHNTASAGKM SENSGVEQLG DACGNAGQNL 60 NLSECQEKTP GQPRKRKSTS GTPISSTRLL RSKSKEKSEA SEANNTVVTH EANEEKKRKR 120 RKKKHSKHIA VNEFTSIRGH LRYLLQRIKY EQTLIEAYSG EGWKGQSLEK IKLEKELERA 180 KAHIFRYKLK IRDLFQRVDT LLTQGRLPES LFDNEGEIDS EDIFCAKCGA KDLPADNDII 240 LCDGACERGF HQLCLEPPLL KEDIPPDDEG WLCPGCDCKV DCIDLLNDLQ GTNLSITDSW 300 EKVYPKEAAA AASGEKLDDI SGLPSDDSED DDYNPENPDV EKNNSGDESS SDESDFFSAS 360 EDLEEVPPKD DELLGLPSED SEDDDYSPDD PDKDEPVKTE SSSSDFTSDS EDLGLIVDTN 420 RLPADELGVS SSVDNSKHSS ASQEEKPKGG RAKKNSLNNE LSDLMQSHSP LVSCKRNIER 480 LDYKKLQDIH LCVKETYGNE SSDSSDEDFE GDPLPKVREN RSAKAAVTSP SSTPADTKYQ 540 SGKQKVSRHT DRGLCKKLKI GGMDTSEPHS SGKKKTYGDG AIKRLYESFK ENQYPDRNAK 600 EKLGKEFGLT AHQVSKWFEN ARHCHRHSSR WDTIMSKKVS KESPSSPNIM GVPLGTGSIS 660 TINNVLCNGV GKMESPRQCL NGEKCHVTDK SEGDLLIQEA SGKKSKKPKA KNDTKDRGLD 720 DTPTNKTSKT QVNSPNSQNV RRSSRLQKQG

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

MRPQLEDQTE MSTLGSTSVS PGKVARTTTR SHNTASAGKM SENSGVEQLG DACGNAGQNL  60
NLSECQEKTP GQPRKRKSTS GTPISSTRLL RSKSKEKSEA SEANNTVVTH EANEEKKRKR  120
RKKKHSKHIA VNEFTSIRGH LRYLLQRIKY EQTLIEAYSG EGWKGQSLEK IKLEKELERA  180
KAHIFRYKLK IRDLFQRVDT LLTQGRLPES LFDNEGEIDS EDIFCAKCGA KDLPADNDII  240
LCDGACERGF HQLCLEPPLL KEDIPPDDEG WLCPGCDCKV DCIDLLNDLQ GTNLSITDSW  300
EKVYPKEAAA AASGEKLDDI SGLPSDDSED DDYNPENPDV EKNNSGDESS SDESDFFSAS  360
EDLEEVPPKD DELLGLPSED SEDDDYSPDD PDKDEPVKTE SSSSDFTSDS EDLGLIVDTN  420
RLPADELGVS SSVDNSKHSS ASQEEKPKGG RAKKNSLNNE LSDLMQSHSP LVSCKRNIER  480
LDYKKLQDIH LCVKETYGNE SSDSSDEDFE GDPLPKVREN RSAKAAVTSP SSTPADTKYQ  540
SGKQKVSRHT DRGLCKKLKI GGMDTSEPHS SGKKKTYGDG AIKRLYESFK ENQYPDRNAK  600
EKLGKEFGLT AHQVSKWFEN ARHCHRHSSR WDTIMSKKVS KESPSSPNIM GVPLGTGSIS  660
TINNVLCNGV GKMESPRQCL NGEKCHVTDK SEGDLLIQEA SGKKSKKPKA KNDTKDRGLD  720
DTPTNKTSKT QVNSPNSQNV RRSSRLQKQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	120	KKRKRR
2	115	122	KKRKRRKK
3	115	123	KKRKRRKKK
4	116	121	KRKRRK
5	117	123	RKRRKKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019256173.1	0.0	PREDICTED: pathogenesis-related homeodomain protein
TrEMBL	A0A1J6HYF9	0.0	A0A1J6HYF9_NICAT; Homeobox protein hat3.1
STRING	XP_009775281.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7220	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	5e-82	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain