PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01326g07001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 222aa MW: 25039.8 Da PI: 6.796 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.9 | 7e-18 | 93 | 146 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Niben101Scf01326g07001.1 93 KKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 146 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.4 | 4.5e-39 | 92 | 166 | 1 | 75 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 ekkrrl+ eqvk+LE+sFe +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlE+dye Lkr+ydalke Niben101Scf01326g07001.1 92 EKKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLERDYEILKRQYDALKE 166 69**********************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.01E-19 | 89 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.8E-17 | 91 | 152 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.471 | 92 | 148 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.9E-15 | 93 | 146 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.10E-16 | 93 | 149 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 95 | 155 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 119 | 128 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 123 | 146 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 128 | 144 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-7 | 148 | 165 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MLSSTTGIMA LVPSTPEISI NFQDNHNIPS TSPKVFPSPC NIPHQDFNGI SSMLMRRSMS 60 FSGVERCDNH QDLRVDDNEM SDDDGSSQLL GEKKRRLNLE QVKALERSFE VANKLEPERK 120 IQLARALGLQ PRQIAIWFQN RRARWKTKQL ERDYEILKRQ YDALKESGGG GAPMINLNKE 180 NEGSWSNGSE ENNSIDVNFG TTTATRTSSG DSPFYSNNNK NN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 148 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018632952.1 | 1e-146 | PREDICTED: homeobox-leucine zipper protein ATHB-13-like isoform X2 | ||||
Swissprot | Q8LC03 | 5e-52 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A1S3ZMJ3 | 1e-144 | A0A1S3ZMJ3_TOBAC; homeobox-leucine zipper protein ATHB-13-like | ||||
STRING | XP_009624441.1 | 1e-145 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 9e-48 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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