PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01326g03002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 286aa MW: 32041.7 Da PI: 5.2167 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.9 | 1.5e-10 | 14 | 43 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g+WT+eEd lv +v+++G+g+W++++ Niben101Scf01326g03002.1 14 KGPWTPEEDIMLVSYVQEHGPGNWRAVPTN 43 79************************9876 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.1e-15 | 48 | 93 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E+ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Niben101Scf01326g03002.1 48 RGSFTDQEENMIIQLQALLGNK-WAAIASYLP-DRTDNDIKNYWNTHL 93 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-12 | 5 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.35E-21 | 11 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6 | 13 | 45 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-9 | 14 | 42 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.776 | 43 | 97 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-22 | 44 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-16 | 47 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-15 | 48 | 93 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.05E-11 | 50 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGRPPCCDKI GVKKGPWTPE EDIMLVSYVQ EHGPGNWRAV PTNTGIKRGS FTDQEENMII 60 QLQALLGNKW AAIASYLPDR TDNDIKNYWN THLKKKLKKL EASDLYSKDG HCLSPLVSNS 120 RGQWERTLQA DINTAKQALQ NALSLDKSSP IHEYTTTGVK PINLGYYSYT KQQGKVSAST 180 YASSAENIAK LLKQWTRSDS TNISEQSKAS SSTQLSCNNN ATTEEFESLS SFESFEQSNS 240 DQFSQSLTLE AGKLHCEISK REVDDQVPLS VMLESWLFDE NEDLLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-18 | 14 | 97 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 3e-18 | 14 | 97 | 27 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 2e-18 | 14 | 97 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-18 | 14 | 97 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009618496.1 | 0.0 | PREDICTED: myb-related protein 306-like | ||||
Refseq | XP_018631287.1 | 0.0 | PREDICTED: myb-related protein 306-like | ||||
Swissprot | P81392 | 7e-85 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A1S3YHB7 | 0.0 | A0A1S3YHB7_TOBAC; myb-related protein 306-like | ||||
STRING | XP_009618496.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 2e-76 | myb domain protein 94 |
Publications ? help Back to Top | |||
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