PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01326g03002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 286aa    MW: 32041.7 Da    PI: 5.2167
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01326g03002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-101443130
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                              +g+WT+eEd  lv +v+++G+g+W++++  
  Niben101Scf01326g03002.1 14 KGPWTPEEDIMLVSYVQEHGPGNWRAVPTN 43
                              79************************9876 PP

2Myb_DNA-binding48.42.1e-154893148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg++T +E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Niben101Scf01326g03002.1 48 RGSFTDQEENMIIQLQALLGNK-WAAIASYLP-DRTDNDIKNYWNTHL 93
                              89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-12543IPR009057Homeodomain-like
SuperFamilySSF466891.35E-211189IPR009057Homeodomain-like
SMARTSM007174.61345IPR001005SANT/Myb domain
PfamPF002495.4E-91442IPR001005SANT/Myb domain
PROSITE profilePS5129423.7764397IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-224498IPR009057Homeodomain-like
SMARTSM007174.2E-164795IPR001005SANT/Myb domain
PfamPF002499.6E-154893IPR001005SANT/Myb domain
CDDcd001674.05E-115092No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGPWTPE EDIMLVSYVQ EHGPGNWRAV PTNTGIKRGS FTDQEENMII  60
QLQALLGNKW AAIASYLPDR TDNDIKNYWN THLKKKLKKL EASDLYSKDG HCLSPLVSNS  120
RGQWERTLQA DINTAKQALQ NALSLDKSSP IHEYTTTGVK PINLGYYSYT KQQGKVSAST  180
YASSAENIAK LLKQWTRSDS TNISEQSKAS SSTQLSCNNN ATTEEFESLS SFESFEQSNS  240
DQFSQSLTLE AGKLHCEISK REVDDQVPLS VMLESWLFDE NEDLLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-1814974105MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-18149727128MYB TRANSFORMING PROTEIN
1mse_C2e-1814974105C-Myb DNA-Binding Domain
1msf_C2e-1814974105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618496.10.0PREDICTED: myb-related protein 306-like
RefseqXP_018631287.10.0PREDICTED: myb-related protein 306-like
SwissprotP813927e-85MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A1S3YHB70.0A0A1S3YHB7_TOBAC; myb-related protein 306-like
STRINGXP_009618496.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-76myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]