PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01326g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 358aa    MW: 38652.9 Da    PI: 8.5263
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01326g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.25.5e-3565122359
               ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                                v+YkeClkNhAaslGghavDGCgEfmps++++  ++++lkCaACgCHRnFHRre+ee
  Niben101Scf01326g02001.1  65 VVTYKECLKNHAASLGGHAVDGCGEFMPSPTANlVDPTSLKCAACGCHRNFHRREPEE 122
                               589****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.7E-2966120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-2266122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.4E-3267119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.89168119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.63E-18211279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-27212279IPR009057Homeodomain-like
TIGRFAMsTIGR015652.1E-24220276IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDISSNTTTA IATTVKSTEA EPETPIRIQP AKPISFSNGV LKRHNSLHLP HHHGFNNNHH  60
HHAVVVTYKE CLKNHAASLG GHAVDGCGEF MPSPTANLVD PTSLKCAACG CHRNFHRREP  120
EEPVLPNQNT IPALEYQPHH RHHPPPPPPP HHGGSGGHSS PNSPSPPPIS SAYYPASAPH  180
MLLALSAGLS GPPAENNPLV SPSSNPMSSA HLSNPNGSGR KRFRTKFTQD QKEKMLEFAE  240
KVEWKIQKRD EELINDFCSK IGVEKGVLKV WMHNNKCKKD QATAAAAISA VATTTNLNGN  300
NANGFGFVSR NNADTIASEF HFHRASSNDN DKNHKHHLHT NDSAGAHGVT TNASSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-202212761873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620291.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG03e-75ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A1S4B4C90.0A0A1S4B4C9_TOBAC; zinc-finger homeodomain protein 9-like
STRINGXP_009620291.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-68homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]