PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01326g00005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 464aa MW: 51209.1 Da PI: 6.2759

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01326g00005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.7e-38	113	171	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+l+cprC+st+tkfCy+nny++sqPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+ Niben101Scf01326g00005.1 113 PDKTLPCPRCNSTETKFCYFNNYNVSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKHKN 171 7899****************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	110	170	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-31	115	171	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.658	117	171	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	119	155	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MSEAIANKDP VIKLFGRTIQ LPDFPTPSPA DTGDHSSSAG EAELEHKGEC DDCKDENKHL 60 IAEELQDRNP IPEKSDIIEV SPSYNDCSTA KTSKSEEEQA ETSNSHEKIL KKPDKTLPCP 120 RCNSTETKFC YFNNYNVSQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKHK NPVLHYRHIS 180 VSETLTDLSN GIQPPPLKLN GTILAFNTDK PLCESMSSVL NIADKTMQNC PENGFHRYKE 240 LGIQAGDNGD DRSDGSSVTA VSSKDSDNGS PDMPRQKYDS FSPHLPCFTG APWPYPWSSV 300 HLSDAVPPPG YYFPGFPMPF VPAYWGCVIP GSWNIPWMSP PTASQNQMPP TSSPNSPALG 360 KHPRDEIILK SMGSEEEPRN ESNPPEKCLW FPKTLRIGDP GEAAKSSIWS TLGIKHDVVD 420 SVSGRSFKAF LPKSDERNHV SENSSVLKAN PAAMSRSLNF NESS

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MSEAIANKDP VIKLFGRTIQ LPDFPTPSPA DTGDHSSSAG EAELEHKGEC DDCKDENKHL  60
IAEELQDRNP IPEKSDIIEV SPSYNDCSTA KTSKSEEEQA ETSNSHEKIL KKPDKTLPCP  120
RCNSTETKFC YFNNYNVSQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKHK NPVLHYRHIS  180
VSETLTDLSN GIQPPPLKLN GTILAFNTDK PLCESMSSVL NIADKTMQNC PENGFHRYKE  240
LGIQAGDNGD DRSDGSSVTA VSSKDSDNGS PDMPRQKYDS FSPHLPCFTG APWPYPWSSV  300
HLSDAVPPPG YYFPGFPMPF VPAYWGCVIP GSWNIPWMSP PTASQNQMPP TSSPNSPALG  360
KHPRDEIILK SMGSEEEPRN ESNPPEKCLW FPKTLRIGDP GEAAKSSIWS TLGIKHDVVD  420
SVSGRSFKAF LPKSDERNHV SENSSVLKAN PAAMSRSLNF NESS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792864.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A1U7Y0V0	0.0	A0A1U7Y0V0_NICSY; cyclic dof factor 3-like
STRING	XP_009792864.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-87	cycling DOF factor 2