PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01316g05002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 322aa    MW: 36648.6 Da    PI: 4.9716
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01316g05002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12170213654
                               HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A++Y+k+L
  Niben101Scf01316g05002.1 170 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 213
                               589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.643164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-15167222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10170213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15171231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.26E-5171218No hitNo description
CDDcd048730.00132264292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MELTQQDLLE ELLAPRRESW NTFQSGVNEF FPNGWTFESP FYQNPEFVAL NSSLLGLITP  60
PESNFQCPLI TSPESYPLIL DSFTAPDNIN DTIPLPLQIQ EEYNNRAMVE NQEEAGIISS  120
DFHGLNDDLN SFSTNDVKVE DANSRIMGVS NVGEKKNKVK KLDGQPSKNL MAERRRRKRL  180
NDRLSMLRSI VPKISKMDRT SILGDAIDYM KELLEKIHTL HEDDNVKDEI KDIKFVGNFK  240
ELKPNEAVVR KPPKFELERR NVDTRIEICC AAKPGLLLST VSTLEALGLD VQQCAREHRT  300
IWSSEDVKQT LFKTAGYGGR CL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172179ERRRRKRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225226.10.0PREDICTED: transcription factor bHLH93-like
TrEMBLA0A314KTP20.0A0A314KTP2_NICAT; Transcription factor bhlh93
STRINGXP_009797668.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-65beta HLH protein 93