PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01310g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 508aa    MW: 56537.4 Da    PI: 7.859
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01310g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.19.3e-42216291277
                               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                               Cqv+gC++dls+ k+yh+rhkvC+ hsk++ v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q
  Niben101Scf01310g00001.1 216 CQVHGCNKDLSSSKDYHKRHKVCDEHSKTSIVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKPQ 291
                               **************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-33210277IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.607213290IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-39214295IPR004333Transcription factor, SBP-box
PfamPF031103.8E-32216289IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MEPLSYALGG RGFLFPDNVE LPVDTLSRSR NIVKDWNLNP FCDVDKHICG PSQEITESSG  60
FLESGIADIF KKSSASNPCP GALSGEIGNG SMLELGAMFN HSATKYNNPT SLPIGLKLDE  120
LTDYGEVRTS QSSKESSVLS SQESSLPTGK AAQIKSLHSQ FPISQVCGQK EEESIVYREV  180
KSNQSLKRNS DLSSVNSSLQ GKRLCTTNLH SEVPFCQVHG CNKDLSSSKD YHKRHKVCDE  240
HSKTSIVIVN GIEQRFCQQC SRFHLLAEFD EGKRSCRKRL AGHNERRRKP QFDTHWGSRF  300
LDMTQRRVPF LFPEILPGSF FYQENYEVNN NDQHLKLDRK PFCISQLAMS VTSGQSPTES  360
VQHQYGMRKQ DLSKVPVGST ILSVQEISAG QNSSCALSLL SAHSQNLLHN STGISPTLPW  420
MVKGGDHAYI KDDHHNLAKS PRVSVPEMQR DGHDQRANSM NSKNCLSPEG GRTMDLVQLS  480
SHLLRVEQQK SSVQVKQEND IFSSFAST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-29211289684squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788762.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_009788763.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_016502562.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A1S4CMR20.0A0A1S4CMR2_TOBAC; squamosa promoter-binding-like protein 6
TrEMBLA0A1U7XD130.0A0A1U7XD13_NICSY; squamosa promoter-binding-like protein 6
STRINGXP_009788762.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68311933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.19e-52SBP family protein