PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01302g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 301aa    MW: 34260.4 Da    PI: 4.8646
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01302g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd++l++ +   G  +W+++++  g+ R++k+c++rw +yl
  Niben101Scf01302g00001.1 14 KGPWTAEEDKKLINFIVNNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                              79******************************99************97 PP
2Myb_DNA-binding51.32.7e-1671111547
                               -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               ++ E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
  Niben101Scf01302g00001.1  71 SEYEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                               6679**************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-21563IPR009057Homeodomain-like
PROSITE profilePS5129414.079961IPR017930Myb domain
SuperFamilySSF466895.62E-2711108IPR009057Homeodomain-like
SMARTSM007173.7E-121363IPR001005SANT/Myb domain
PfamPF002491.7E-141461IPR001005SANT/Myb domain
CDDcd001671.24E-81661No hitNo description
PROSITE profilePS5129424.68362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2464116IPR009057Homeodomain-like
SMARTSM007175.0E-1466114IPR001005SANT/Myb domain
PfamPF002495.4E-1471111IPR001005SANT/Myb domain
CDDcd001679.99E-1174112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDKKLINFIV NNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGIL SEYEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPVTHKPLS TITNNQITNI EQPENLPIQQ ENLQEIMQPS SVNDVSIDQS AITEIKLDDD  180
DNNNKNMGTS CINNNNNFDS TILEVNNNGF CTNEVPLIEP HEILVPSKST PSTSSSSSSS  240
SSSNIIEDLK FLPSFDDWPM ENNMGFGWEN DFSSTLDFLL NDDNDMNNVT YDESWKFEQL  300
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019237380.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9C7U71e-92MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A1J6KI210.0A0A1J6KI21_NICAT; Myb-related protein pp2
STRINGXP_009792876.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.13e-93myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]