PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01297g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 481aa MW: 53984.3 Da PI: 4.0987 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.1 | 7.1e-21 | 69 | 123 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr++ +g+WvAeIr+ +++ ng kr +lg+f ta eAa a+++a+k+++g+ Niben101Scf01297g01001.1 69 CKYRGVRQRT-WGKWVAEIREpVYNsNG--KRLWLGTFSTAVEAAIAYDEAAKAMYGH 123 79*****999.**********7777665..*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.43E-31 | 69 | 131 | No hit | No description |
Pfam | PF00847 | 7.1E-14 | 69 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-29 | 70 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-21 | 70 | 131 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.589 | 70 | 130 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-34 | 70 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MDYCGNRRMR RRRNGSASID ETLLMWKNQK QELDATLDGG IKKKRRNFPA KGSKKGCMRG 60 KGGPENLGCK YRGVRQRTWG KWVAEIREPV YNSNGKRLWL GTFSTAVEAA IAYDEAAKAM 120 YGHNAILNFP DYSVQDSELA NYSTSVSIAR TTSLESSDSS VEDSRIEPDL QTSDTPDDCV 180 VALTDEKTIL DDPTNLCSDG IADGDPGAQQ DSSVCCLNME SVVIEVDDSL DGIKDLNCST 240 RIESEPIIEP TSSRVKVETP SDNDFVQDRR LECVDDPIKV SNSLHILHQE MIDVKPNDSI 300 FQHDVLNENY EYGDQVLLPC DPIALPDYDC SANALQEQPL DFRSSDNTSA DIHSHLEYRE 360 YLLMEDNNTM EATTVSDTFW LNENIGESYN LESFLDESFD VNNLKTEELS DYYNYDQQIN 420 LLNARTNAEV HSDGVISEGS ESNEKCINIP GLEDHGTEFN MEDLYILNSD FDISSILGDI 480 F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-20 | 68 | 130 | 3 | 63 | ATERF1 |
3gcc_A | 7e-20 | 68 | 130 | 3 | 63 | ATERF1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 11 | RRMRRR |
2 | 41 | 45 | KKKRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019248910.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2B-like | ||||
TrEMBL | A0A1J6I9X9 | 0.0 | A0A1J6I9X9_NICAT; Dehydration-responsive element-binding protein 2a | ||||
STRING | XP_009768300.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7965 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40350.1 | 1e-34 | ERF family protein |