PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01297g01001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 481aa    MW: 53984.3 Da    PI: 4.0987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01297g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.17.1e-2169123156
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               ++y+GVr++  +g+WvAeIr+ +++ ng  kr +lg+f ta eAa a+++a+k+++g+
  Niben101Scf01297g01001.1  69 CKYRGVRQRT-WGKWVAEIREpVYNsNG--KRLWLGTFSTAVEAAIAYDEAAKAMYGH 123
                               79*****999.**********7777665..*************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.43E-3169131No hitNo description
PfamPF008477.1E-1469123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-2970131IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-2170131IPR016177DNA-binding domain
PROSITE profilePS5103222.58970130IPR001471AP2/ERF domain
SMARTSM003801.7E-3470136IPR001471AP2/ERF domain
PRINTSPR003672.0E-97182IPR001471AP2/ERF domain
PRINTSPR003672.0E-996112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MDYCGNRRMR RRRNGSASID ETLLMWKNQK QELDATLDGG IKKKRRNFPA KGSKKGCMRG  60
KGGPENLGCK YRGVRQRTWG KWVAEIREPV YNSNGKRLWL GTFSTAVEAA IAYDEAAKAM  120
YGHNAILNFP DYSVQDSELA NYSTSVSIAR TTSLESSDSS VEDSRIEPDL QTSDTPDDCV  180
VALTDEKTIL DDPTNLCSDG IADGDPGAQQ DSSVCCLNME SVVIEVDDSL DGIKDLNCST  240
RIESEPIIEP TSSRVKVETP SDNDFVQDRR LECVDDPIKV SNSLHILHQE MIDVKPNDSI  300
FQHDVLNENY EYGDQVLLPC DPIALPDYDC SANALQEQPL DFRSSDNTSA DIHSHLEYRE  360
YLLMEDNNTM EATTVSDTFW LNENIGESYN LESFLDESFD VNNLKTEELS DYYNYDQQIN  420
LLNARTNAEV HSDGVISEGS ESNEKCINIP GLEDHGTEFN MEDLYILNSD FDISSILGDI  480
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2068130363ATERF1
3gcc_A7e-2068130363ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1611RRMRRR
24145KKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248910.10.0PREDICTED: dehydration-responsive element-binding protein 2B-like
TrEMBLA0A1J6I9X90.0A0A1J6I9X9_NICAT; Dehydration-responsive element-binding protein 2a
STRINGXP_009768300.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.11e-34ERF family protein