PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01295g05008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 491aa MW: 51627 Da PI: 8.263 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.6 | 3.6e-12 | 53 | 77 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ Niben101Scf01295g05008.1 53 EPDCIYYLRTGFCGYGARCRFNHPR 77 799********************96 PP | |||||||
2 | zf-CCCH | 37 | 5.6e-12 | 99 | 123 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ Niben101Scf01295g05008.1 99 QPVCQYYMRTGMCKFGASCKYHHPR 123 689********************96 PP | |||||||
3 | zf-CCCH | 32.2 | 1.8e-10 | 145 | 168 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+++ +tG+Ck+G +CkF+H+ Niben101Scf01295g05008.1 145 EKECSYYVKTGQCKFGISCKFHHP 168 689********************8 PP | |||||||
4 | zf-CCCH | 37 | 5.5e-12 | 314 | 340 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++++G CkyG++C+++H+p Niben101Scf01295g05008.1 314 PGQPECQYYMKYGDCKYGSSCRYHHPP 340 5789*********************97 PP | |||||||
5 | zf-CCCH | 35.6 | 1.6e-11 | 362 | 386 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C+++a++G Ck+G++CkF H++ Niben101Scf01295g05008.1 362 APICSHYAQNGVCKFGPSCKFDHPM 386 589********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 6.0E-6 | 50 | 77 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.652 | 50 | 78 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 53 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 54 | 79 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-5 | 56 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-7 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.554 | 96 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-5 | 101 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-5 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.845 | 142 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-6 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-8 | 145 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-6 | 313 | 340 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.389 | 313 | 341 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-9 | 315 | 340 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 317 | 340 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-4 | 319 | 340 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-6 | 358 | 385 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-7 | 359 | 386 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 359 | 387 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-9 | 362 | 386 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-5 | 364 | 384 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MERYSGTQSM EVGAPVDPVS EWTVPGGEPG LEEPMWQLSL NTGPESYPER PNEPDCIYYL 60 RTGFCGYGAR CRFNHPRDRN SVLGAMRTMG GEYPERVGQP VCQYYMRTGM CKFGASCKYH 120 HPRQGGGSPA PVTVNIYGYP LRLGEKECSY YVKTGQCKFG ISCKFHHPHP AGAQMPAPAA 180 GPGPLAVPAA VPAPHIYPTV QSPSVQSAQQ YGVVSGNWSV ARPTLLPGSY IPGTYGSMLL 240 PPGMVPLPGW TPYPAPASPA PSPSTQPPAA AGPIYGLSQL SPSAPAYMGP YLSVASASGP 300 SSSSQKEHAF PERPGQPECQ YYMKYGDCKY GSSCRYHHPP EWSGPKTSFI LSAMGLPLRP 360 GAPICSHYAQ NGVCKFGPSC KFDHPMGMSY SPSASSLADM AVAPYPVGSS IGTLAPSSSS 420 SDLRPELVSG SGRDAFSTQI SSMSTSSGSV GSMFSKGGHA SHSGVQQSVQ SSHPSSGSSS 480 ASHGGQARTS S |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019226016.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 58-like | ||||
Swissprot | Q6NPN3 | 1e-160 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | A0A314KSJ4 | 0.0 | A0A314KSJ4_NICAT; Zinc finger ccch domain-containing protein 34 | ||||
STRING | XP_009588295.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2412 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-129 | C3H family protein |
Publications ? help Back to Top | |||
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