PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01295g05006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 348aa    MW: 39222.8 Da    PI: 4.7249
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01295g05006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-1756104355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Niben101Scf01295g05006.1  56 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 104
                               56******.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.61355112IPR001471AP2/ERF domain
CDDcd000183.32E-2855111No hitNo description
SMARTSM003809.1E-3255118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-2856111IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-2056112IPR016177DNA-binding domain
PRINTSPR003671.3E-75667IPR001471AP2/ERF domain
PfamPF008473.8E-1158104IPR001471AP2/ERF domain
PRINTSPR003671.3E-77894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSSSSTPSSE NINQLPFGMF EPIRTPTGYS WLQRNTAICQ PSEKRGRRKQ AEPGRFLGVR  60
RRPWGRYAAE IRDPTTKERH WLGTFDTAQE AALAYDRAAL SMKGTQARTN FIYTCDNNNS  120
FPSLISPFYS VQNILQPNSH FNFKNAPTQN NNKNVITTTT SDNETSNNSH DSYSSSPNEN  180
NSFFLTPSHE NSGYLDCIVP DSCLKPPPSS TPQSKMITKN SQENSNIDHH QNYITTFSEN  240
PSNFSFNSGF WDGDDQEMYT SSWENSCELS AMMMNNNIMS SNSEINGNNI KEMVDVGDCY  300
YPSMEINAAF DHDNMIVQPS EITTTNTTTT SSSIFQPFSD VEFGYSLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2046111571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226012.10.0PREDICTED: ethylene-responsive transcription factor ERF086-like
TrEMBLA0A1S3YNJ30.0A0A1S3YNJ3_TOBAC; ethylene-responsive transcription factor ERF086-like
STRINGXP_009774843.10.0(Nicotiana sylvestris)
STRINGXP_009588287.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93072125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.13e-53ERF family protein