PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01247g05006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 336aa    MW: 37547.2 Da    PI: 10.2474
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01247g05006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix476.6e-1596186186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                               +W++  +++L+ea  ++  +l+rg+l+ ++W+ev++++     + ++  r+ +qCk++++ l+k+yk +k++ ++ + + + t+p
  Niben101Scf01247g05006.1  96 CWSEAATHTLVEAWGSKYVELNRGNLRHQQWQEVADAVnalhgHTKKQYRTDIQCKNRIDTLKKKYKIEKARVSQSQGRYVPTWP 180
                               7*************************************999987778889*************************9999****** PP

                  trihelix  81 yfdqle 86 
                               +f++l+
  Niben101Scf01247g05006.1 181 FFSSLN 186
                               ***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-2494188No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MFRRHGRNDN RSPHSASNPD SSTTSHLPSA GVAAASRPHT MSDDDDHLAP PFFIKNSPSS  60
SASPPPPCTD NKLLALPPPP ASVSARTPVF PAREDCWSEA ATHTLVEAWG SKYVELNRGN  120
LRHQQWQEVA DAVNALHGHT KKQYRTDIQC KNRIDTLKKK YKIEKARVSQ SQGRYVPTWP  180
FFSSLNALIG VTYKVSPSPS PETFIPQRRK SPSPSPATFT PQRRSNFSAM AAAAAAASED  240
SGEEDEEGSE KSSRKRSGGE VVEGGGYRMI AEAIGRFGEI YERVEKAKQR QMVELEKQRM  300
QFAKDLEIQR MKLIMESQVQ LQKLKRSKPH FTSRKY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264005.11e-177PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A314L5D91e-175A0A314L5D9_NICAT; Trihelix transcription factor asil2
STRINGXP_009784429.11e-166(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.13e-48sequence-specific DNA binding transcription factors