PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01240g11002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 416aa    MW: 46168.1 Da    PI: 6.9409
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01240g11002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.65.1e-32226281156
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                               k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Niben101Scf01240g11002.1 226 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 281
                               68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.714223283IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-28223284IPR009057Homeodomain-like
SuperFamilySSF466895.38E-17224284IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-26226281IPR006447Myb domain, plants
PfamPF002497.0E-7228279IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MMSSPSQLSL ECKPHQSYSM LLKSFGENFD QTHNLEEFVA RLEEERVKID AFKRELPLCM  60
QLLTNAMEAS RQQLQSYREN QGRKPVLEEF IPLKNNNASG EENEKNIANT TDHNKANWMT  120
SAQLWSPGSE EIKEKSTQTS SKEITDIGIS KLAFDNNFPS PTLALASTKQ SIEIVEDNKN  180
LETVNNYSGK DNSILEQGKG GSTINQPDSQ STGAVTNSTT TQQHRKARRC WSPDLHRRFV  240
NALQMLGGSQ VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPSPSPQ VATSAPHLVV  300
LGGIWVPSEY AATAAHGGTP PATTFYGPHT TSHAPSPHYI AAPHGTMAQE FYTTTASQPL  360
QSLHHLQHQQ LYHHGGQMYK PPSNSLTHSS PEPESRRTGD GDRSESIEDG KSESSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13226279255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13226279255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-13226279154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13226279154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13226279154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13226279154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13226279255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13226279255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13226279255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13226279255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13226279255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13226279255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630682.10.0PREDICTED: myb family transcription factor EFM
SwissprotQ9ZQ851e-109EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A1U7VWQ80.0A0A1U7VWQ8_NICSY; uncharacterized protein LOC104217775
STRINGXP_009630682.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87942229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-107G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]