PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01237g06003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 318aa    MW: 36034.3 Da    PI: 5.0711
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01237g06003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.5e-1981131155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                               ++y+GVr++  +g+WvAeIr+p     +  +r +lg+f+ta eAa a+++a+++ +g
  Niben101Scf01237g06003.1  81 CRYRGVRQRT-WGKWVAEIREP-----HrgRRLWLGTFDTAVEAALAYDEAARAVYG 131
                               78*****999.**********6.....337**********************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-1381131IPR001471AP2/ERF domain
CDDcd000187.82E-3281140No hitNo description
Gene3DG3DSA:3.30.730.104.6E-3082140IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2182139IPR016177DNA-binding domain
SMARTSM003803.7E-3582145IPR001471AP2/ERF domain
PROSITE profilePS5103221.48382139IPR001471AP2/ERF domain
PRINTSPR003674.3E-108394IPR001471AP2/ERF domain
PRINTSPR003674.3E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAVLDQASNM ISLPLDYARK RTSRNRKDAP KNVAETLTKW KEVNEKLESS DDGKKPVRKV  60
PTKGSKKGCM KGKGGPENGR CRYRGVRQRT WGKWVAEIRE PHRGRRLWLG TFDTAVEAAL  120
AYDEAARAVY GPCARLNLPN YPSSNESTKD DSSWNTFELN KEETKDEAKG VLDNSEVVEI  180
KEEPIAFDYD SMKSGQDNNL DNFCFDDEMF DVDELLVVLD STPLDALAPN HVSGSIPLDQ  240
DQYAHDHSYR LQRSSYDNNQ FSNTLYQLQN TDGMSIDPIP LIVRMPPHCD SISVAIEDEN  300
FPRVEEIIPI RKKLGPTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1683139360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-1683146670ATERF1
3gcc_A2e-1683146670ATERF1
5wx9_A3e-1672140573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788693.11e-152PREDICTED: dehydration-responsive element-binding protein 2A-like
RefseqXP_016451781.11e-152PREDICTED: dehydration-responsive element-binding protein 2A-like
RefseqXP_019245341.11e-152PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLA0A1J6IF771e-150A0A1J6IF77_NICAT; Dehydration-responsive element-binding protein 2a
TrEMBLA0A1S3YHP71e-151A0A1S3YHP7_TOBAC; dehydration-responsive element-binding protein 2A-like
TrEMBLA0A1U7XCU41e-151A0A1U7XCU4_NICSY; dehydration-responsive element-binding protein 2A-like
STRINGXP_009788693.11e-151(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-34DRE-binding protein 2A