PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01232g03009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 295aa MW: 32552 Da PI: 9.7186 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.7 | 2.2e-12 | 50 | 94 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Niben101Scf01232g03009.1 50 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 94 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.77E-16 | 44 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.18 | 45 | 99 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-6 | 48 | 100 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-18 | 48 | 97 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.5E-10 | 49 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-10 | 50 | 94 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-7 | 52 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MVMALPNIGS FSNPTATASA AATASASSPL SPSDDPSKKI RKPYTITKSR ESWTEPEHDK 60 FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK SGTNEHLPPP RPKRKAAHPY 120 PQKASKSAPS LSPVTASFQA SLPLPDPGFV TRPDTSLLPS NPVTVTSVPS WTDNSVPPVS 180 LSQMKKDNMR EPGQPVSNTH CCSSNESTPG SKSTVLPDFV QVYNFIGSVF DPAVTGHLQK 240 LKKMDRIDVE TVLLLMRNLS INLTSPDFEH HRQLLSSYDM DMEKQCKSSH QLQPT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802901.1 | 0.0 | PREDICTED: protein REVEILLE 6 | ||||
Refseq | XP_016499974.1 | 0.0 | PREDICTED: protein REVEILLE 6-like | ||||
Swissprot | Q8H0W3 | 1e-105 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A1S4CG80 | 0.0 | A0A1S4CG80_TOBAC; protein REVEILLE 6-like | ||||
TrEMBL | A0A1U7YLN6 | 0.0 | A0A1U7YLN6_NICSY; protein REVEILLE 6 | ||||
STRING | XP_009802901.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA998 | 24 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 7e-91 | MYB_related family protein |
Publications ? help Back to Top | |||
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