PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01227g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 198aa    MW: 23230.3 Da    PI: 9.3122
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01227g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.6e-082464341
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqck 41
                               WT+eE +++  a + +  +   +W+ +a++++ g+++ ++ 
  Niben101Scf01227g00005.1 24 EWTKEENKKFESALAIYDEKtpnRWSMVAAMIP-GKSALDVM 64
                              7********************************.***98875 PP

2Myb_DNA-binding31.34.6e-10121149331
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartm 31 
                               +WT+eE+ +++ + +++G+g+W+ I+r +
  Niben101Scf01227g00005.1 121 PWTEEEHRRFLMGLEKYGKGDWRNISRNF 149
                               8*************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-51469IPR009057Homeodomain-like
PROSITE profilePS500906.9691771IPR017877Myb-like domain
SuperFamilySSF466891.42E-111971IPR009057Homeodomain-like
SMARTSM007174.8E-102173IPR001005SANT/Myb domain
CDDcd001673.76E-72471No hitNo description
PfamPF002492.8E-62467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-9111150IPR009057Homeodomain-like
PROSITE profilePS5129412.328114167IPR017930Myb domain
SuperFamilySSF466892.54E-9115166IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-11117166IPR006447Myb domain, plants
SMARTSM007170.0038118165IPR001005SANT/Myb domain
PfamPF002492.6E-7121149IPR001005SANT/Myb domain
CDDcd001671.64E-6121149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
METLFPTTFM PNSNWMMQQS KSTEWTKEEN KKFESALAIY DEKTPNRWSM VAAMIPGKSA  60
LDVMMQYKEL VADVSDIEAG FVPTPRPFAS SFTLEFVDHR EIHAFRKRGK SCDQERKKGV  120
PWTEEEHRRF LMGLEKYGKG DWRNISRNFV ISKLQHNHAQ KYYLRQLSEG KDKKRPSIHD  180
NTTVHLADDE LLNNNNNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105117RKRGKSCDQERKK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776702.11e-131PREDICTED: transcription factor DIVARICATA-like
RefseqXP_016450782.11e-131PREDICTED: transcription factor DIVARICATA-like
RefseqXP_019241356.11e-131PREDICTED: transcription factor DIVARICATA-like isoform X1
RefseqXP_019241357.11e-131PREDICTED: transcription factor DIVARICATA-like isoform X2
SwissprotQ8S9H73e-72DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1J6JSM61e-130A0A1J6JSM6_NICAT; Transcription factor myb1r1
TrEMBLA0A1S3YFH91e-130A0A1S3YFH9_TOBAC; transcription factor DIVARICATA-like
TrEMBLA0A1U7W9M11e-130A0A1U7W9M1_NICSY; transcription factor DIVARICATA-like
STRINGXP_009776702.11e-131(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.15e-76MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]