PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01227g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 198aa MW: 23230.3 Da PI: 9.3122 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.6e-08 | 24 | 64 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqck 41 WT+eE +++ a + + + +W+ +a++++ g+++ ++ Niben101Scf01227g00005.1 24 EWTKEENKKFESALAIYDEKtpnRWSMVAAMIP-GKSALDVM 64 7********************************.***98875 PP | |||||||
2 | Myb_DNA-binding | 31.3 | 4.6e-10 | 121 | 149 | 3 | 31 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartm 31 +WT+eE+ +++ + +++G+g+W+ I+r + Niben101Scf01227g00005.1 121 PWTEEEHRRFLMGLEKYGKGDWRNISRNF 149 8*************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-5 | 14 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.969 | 17 | 71 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.42E-11 | 19 | 71 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-10 | 21 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.76E-7 | 24 | 71 | No hit | No description |
Pfam | PF00249 | 2.8E-6 | 24 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-9 | 111 | 150 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.328 | 114 | 167 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.54E-9 | 115 | 166 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-11 | 117 | 166 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 0.0038 | 118 | 165 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-7 | 121 | 149 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.64E-6 | 121 | 149 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
METLFPTTFM PNSNWMMQQS KSTEWTKEEN KKFESALAIY DEKTPNRWSM VAAMIPGKSA 60 LDVMMQYKEL VADVSDIEAG FVPTPRPFAS SFTLEFVDHR EIHAFRKRGK SCDQERKKGV 120 PWTEEEHRRF LMGLEKYGKG DWRNISRNFV ISKLQHNHAQ KYYLRQLSEG KDKKRPSIHD 180 NTTVHLADDE LLNNNNNK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 117 | RKRGKSCDQERKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776702.1 | 1e-131 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_016450782.1 | 1e-131 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_019241356.1 | 1e-131 | PREDICTED: transcription factor DIVARICATA-like isoform X1 | ||||
Refseq | XP_019241357.1 | 1e-131 | PREDICTED: transcription factor DIVARICATA-like isoform X2 | ||||
Swissprot | Q8S9H7 | 3e-72 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1J6JSM6 | 1e-130 | A0A1J6JSM6_NICAT; Transcription factor myb1r1 | ||||
TrEMBL | A0A1S3YFH9 | 1e-130 | A0A1S3YFH9_TOBAC; transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1U7W9M1 | 1e-130 | A0A1U7W9M1_NICSY; transcription factor DIVARICATA-like | ||||
STRING | XP_009776702.1 | 1e-131 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 5e-76 | MYB family protein |
Publications ? help Back to Top | |||
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