PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf01221g13007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 30579.6 Da PI: 9.7599 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.4 | 3.7e-19 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++vk++G g+W+++ar g++R +k+c++rw +yl Niben101Scf01221g13007.1 13 KGPWTAEEDRLLIEYVKLHGEGRWNSVARLTGLKRNGKSCRLRWVNYL 60 79******************************9*************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Niben101Scf01221g13007.1 66 RGQITPHEERIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 110 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.493 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.04E-30 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-17 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-17 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-24 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.69E-12 | 15 | 60 | No hit | No description |
SMART | SM00717 | 6.4E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.616 | 65 | 115 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.3E-14 | 66 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-24 | 68 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.80E-10 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MGNWGIIEES WRKGPWTAEE DRLLIEYVKL HGEGRWNSVA RLTGLKRNGK SCRLRWVNYL 60 RPDLKRGQIT PHEERIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH FKKKTKTSCV 120 SSEKSRARLW KKQHFQQQQQ LQQQQQQQQI NNQIDIKRVM SLFDHYENKV PTMQPKQEMT 180 ILYQNSVDQQ NQVGLFYSML NGCSSVSVPE PSSVEDIMWD GLWNLDDFYG QFINTTTYNK 240 TITTPNCLQT MDTTTAFY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-28 | 13 | 115 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009795062.1 | 1e-146 | PREDICTED: transcription factor MYB21-like | ||||
Refseq | XP_016493463.1 | 1e-146 | PREDICTED: myb-related protein 305-like | ||||
TrEMBL | A0A1S4BX88 | 1e-144 | A0A1S4BX88_TOBAC; myb-related protein 305-like | ||||
TrEMBL | A0A1U7XSM8 | 1e-144 | A0A1U7XSM8_NICSY; transcription factor MYB21-like | ||||
STRING | XP_009795062.1 | 1e-145 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24310.1 | 6e-80 | myb domain protein 305 |