PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01200g07006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 255aa MW: 28220.9 Da PI: 7.5061

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01200g07006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.3e-18	9	54	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v q+G+++W++I+ ++ gR++k+c++rw + Niben101Scf01200g07006.1 9 KGSWSPEEDAMLTKLVDQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 54 799***************************.*********985 PP
2	Myb_DNA-binding	55	1.9e-17	63	105	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++++a++ +G++ W+tIar ++ gRt++ +k++w++ Niben101Scf01200g07006.1 63 PFTPSEDAIILQAHAVHGNR-WATIARLLP-GRTDNAIKNHWNST 105 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.399	4	55	IPR017930	Myb domain
SuperFamily	SSF46689	1.46E-30	7	102	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-15	8	57	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-17	9	54	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-25	10	62	IPR009057	Homeodomain-like
CDD	cd00167	8.10E-15	11	53	No hit	No description
PROSITE profile	PS51294	25.462	56	110	IPR017930	Myb domain
SMART	SM00717	2.4E-15	60	108	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-23	63	109	IPR009057	Homeodomain-like
Pfam	PF00249	9.4E-15	63	105	IPR001005	SANT/Myb domain
CDD	cd00167	4.93E-13	63	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MDGTGEKIKG SWSPEEDAML TKLVDQHGPR NWSLISTGIP GRSGKSCRLR WCNQLSPAVQ 60 HRPFTPSEDA IILQAHAVHG NRWATIARLL PGRTDNAIKN HWNSTLRRKR HAPEAAAAVT 120 MLMPFDESRT GSSSESNSKR QCSRASQEQS SCGLDADELG LNGPETSLTL SLPVGRLLQS 180 LVVDEEKVKD EVPPPFNGDH KVKEEKCTVE MEETCLVTTM QRMIAHEVRC YIDKLRAQGG 240 FRIGPGFESD VPKQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-39	6	109	1	104	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019262180.1	1e-177	PREDICTED: myb protein-like
TrEMBL	A0A314L8L3	1e-175	A0A314L8L3_NICAT; Transcription factor myb44
STRING	XP_009785340.1	1e-173	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12883	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-54	myb domain protein 73