PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01189g01003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 760aa MW: 82917.8 Da PI: 7.1226

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01189g01003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.7e-09	544	581	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Niben101Scf01189g01003.1 544 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 581 664459******************************88 PP
2	BELL	120.9	5.4e-39	405	476	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA ka+SrhFrcLkdai+ q+ Niben101Scf01189g01003.1 405 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAIPYTALAHKAMSRHFRCLKDAITAQL 476 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.9E-79	331	474	IPR006563	POX domain
Pfam	PF07526	1.3E-53	336	473	IPR006563	POX domain
PROSITE profile	PS50071	12.568	522	585	IPR001356	Homeobox domain
CDD	cd00086	1.75E-12	525	586	No hit	No description
SMART	SM00389	1.2E-9	525	589	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.59E-17	527	592	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.1E-29	528	591	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	542	581	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence Send to blast
MGITSTPPRP SIVTSHNSKG HINPTILHQL SENPNSMSQD YHHQSLFSFP NGFERSQAEQ 60 QQQQQQQQHM AQQIRRDKLR VQGFESQPFE QETSGLPVYD QTAGMLSEMF NFPPGTSTEL 120 LEAQFNPNFR HPNPSQRSQT QQIPPPAGMG NEWLGNRQGM VVPLGYAKNH NNQISSAGIN 180 AAESMQLFLM NPQPRSPSPS PSHPPPPTNS STLHMLLPNP SSTSTLEGFP NPAEGSFGQF 240 TWGNNGGASA TLNVNHVVES QGLSLSLSSS LQHKAEELRM GEESGMLFFN QGGGGSTTSG 300 QFRYKNLNIG NSGLVGQNLH QQVHVGYGSS LGVVNVLRNS KYAKAAQELL EEFCSVGRGK 360 FKKNNKAAAA NPNSNNPSGG TNGGGGNNNT SSSSSKDLPP LSAADRIEHQ RRKVKLLSML 420 DEVDRRYNHY CEQMQMVVNS FDLVMGFGAA IPYTALAHKA MSRHFRCLKD AITAQLKHSC 480 EMLGDKDAGT SGLTKGETPR LKMLEQSLRQ QRAFHQMGMM EQEAWRPQRG LPERSVNILR 540 AWLFEHFLHP YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMVEEM YQQEAKEEDE 600 DDEKENSQNQ NSGNIAQTPT PNMSNSSSTN MTTTTTALGA AAAAAETGTA ATATTATATA 660 ASTLGKRSEI NAPENDPSLV AINSHISFSE NQATFPTNIH YSDAAACRRG SNFTGDDYGT 720 TTNTDVGSTM IRFGTTAGDV SLTLGLRHAG NLPDNTHFFG

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence Send to blast

MGITSTPPRP SIVTSHNSKG HINPTILHQL SENPNSMSQD YHHQSLFSFP NGFERSQAEQ  60
QQQQQQQQHM AQQIRRDKLR VQGFESQPFE QETSGLPVYD QTAGMLSEMF NFPPGTSTEL  120
LEAQFNPNFR HPNPSQRSQT QQIPPPAGMG NEWLGNRQGM VVPLGYAKNH NNQISSAGIN  180
AAESMQLFLM NPQPRSPSPS PSHPPPPTNS STLHMLLPNP SSTSTLEGFP NPAEGSFGQF  240
TWGNNGGASA TLNVNHVVES QGLSLSLSSS LQHKAEELRM GEESGMLFFN QGGGGSTTSG  300
QFRYKNLNIG NSGLVGQNLH QQVHVGYGSS LGVVNVLRNS KYAKAAQELL EEFCSVGRGK  360
FKKNNKAAAA NPNSNNPSGG TNGGGGNNNT SSSSSKDLPP LSAADRIEHQ RRKVKLLSML  420
DEVDRRYNHY CEQMQMVVNS FDLVMGFGAA IPYTALAHKA MSRHFRCLKD AITAQLKHSC  480
EMLGDKDAGT SGLTKGETPR LKMLEQSLRQ QRAFHQMGMM EQEAWRPQRG LPERSVNILR  540
AWLFEHFLHP YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMVEEM YQQEAKEEDE  600
DDEKENSQNQ NSGNIAQTPT PNMSNSSSTN MTTTTTALGA AAAAAETGTA ATATTATATA  660
ASTLGKRSEI NAPENDPSLV AINSHISFSE NQATFPTNIH YSDAAACRRG SNFTGDDYGT  720
TTNTDVGSTM IRFGTTAGDV SLTLGLRHAG NLPDNTHFFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	531	589	5	63	Homeobox protein Meis2
3k2a_B	2e-16	531	589	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776283.1	0.0	PREDICTED: BEL1-like homeodomain protein 2
Swissprot	Q9SW80	1e-157	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1U7WCA3	0.0	A0A1U7WCA3_NICSY; BEL1-like homeodomain protein 2
STRING	XP_009776283.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-138	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]