PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01181g00024.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 1026aa    MW: 115470 Da    PI: 6.8008
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01181g00024.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-13486530146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               r  WT+eEd +l  av+ +G  +W ++a+ +  gRt+ qc +rw k
  Niben101Scf01181g00024.1 486 RREWTEEEDIKLCAAVENFGESNWQLVASVIE-GRTGTQCSNRWIK 530
                               678*****************************.***********87 PP
2Myb_DNA-binding41.53.1e-13540597246
                               SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 
                               g+W+++Ed++l+ av ++ ++               Wk+Ia++++ gRt  qc++rw +
  Niben101Scf01181g00024.1 540 GKWSADEDKRLKVAVMLFHPKswrnigqsvpcrapIWKKIAQYVP-GRTHVQCRERWVN 597
                               89*****************99************************.***********87 PP
3Myb_DNA-binding42.41.6e-13607649347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                WT+eEd++l+ a+ + G   W+++a++++  Rt++qc+ rw  +
  Niben101Scf01181g00024.1 607 EWTEEEDLKLKSAIDEQGYS-WSKVAACVP-PRTDNQCRRRWKVL 649
                               7*****************99.*********.9**********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.655328427IPR017877Myb-like domain
SMARTSM007170.007332429IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-8335351IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-8400439IPR009057Homeodomain-like
SuperFamilySSF466898.41E-12410480IPR009057Homeodomain-like
SMARTSM007170.067432482IPR001005SANT/Myb domain
PROSITE profilePS500906.47436480IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.9E-8440486IPR009057Homeodomain-like
SuperFamilySSF466891.52E-18466537IPR009057Homeodomain-like
PROSITE profilePS5129419.966481536IPR017930Myb domain
SMARTSM007178.5E-13485534IPR001005SANT/Myb domain
PfamPF002493.3E-12486530IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-16487537IPR009057Homeodomain-like
CDDcd001672.02E-10488532No hitNo description
PROSITE profilePS500908.873534599IPR017877Myb-like domain
SMARTSM007176.7E-10538601IPR001005SANT/Myb domain
PfamPF002498.2E-11540597IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-15540602IPR009057Homeodomain-like
CDDcd001678.11E-7541599No hitNo description
SuperFamilySSF466892.38E-24579652IPR009057Homeodomain-like
PROSITE profilePS5129421.057600654IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-16603648IPR009057Homeodomain-like
SMARTSM007176.5E-12604652IPR001005SANT/Myb domain
CDDcd001671.21E-10607650No hitNo description
PfamPF002491.4E-12607648IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1026 aa     Download sequence    Send to blast
MAFDDDEDFY GSDSDDGFQE DMEALKKACR LACKETDDLQ PSCSTGDIGG GHVTGADDVT  60
PSGTDVDDVD DDIELVRSIQ KRFALSTELR EPLTLKPLCS LPPPDSEGDD DDNDFETLHA  120
IQRRFAAYDD DSGKGRKESP LNNFQQVGVT NITSEKESSN NFFVERTNAG EGFPACVDGT  180
TQISDGCSNE IASSQNLIEW HDSGAENTAV SVNSFCFPKS AQAFVEAIKK NRSCQKIIRD  240
KMMQIEARME ELKKLKERVK ILKGFQIASR KRMGRALSQK RDARVQLISL PKQKCSSKLQ  300
GKKLSAIHNG PPENSHVASF REALTHFAVS LSRKEWSKEE KENLAKGVKQ QFQEMLLQRS  360
VDLLSNEDER SGESGDLDGV IASIRDVVIT PETMRLFLPK VNWDQLATMY IPGRSGAKCE  420
SRWLNWEDLL IKHEEWDILE EKALLHAVQQ NEMSNWIDIS ASLGVCRTPF QCLSHYQRSL  480
NASILRREWT EEEDIKLCAA VENFGESNWQ LVASVIEGRT GTQCSNRWIK SLHPTRKRCG  540
KWSADEDKRL KVAVMLFHPK SWRNIGQSVP CRAPIWKKIA QYVPGRTHVQ CRERWVNSLD  600
PSLKLDEWTE EEDLKLKSAI DEQGYSWSKV AACVPPRTDN QCRRRWKVLF PHEVPMLQEA  660
KRIRREAFIS NFVDREEERP ALKPNDIVPT HKLSYRAGCG TASANKRKKL RPRAARDDSA  720
PRSDALCELE RRHLEESEGP EFSDLLNNSS LSSRDQEIER VSDGEETFEQ GYHDSTKNKR  780
PSKLHPRRTK KLAPNDMVRE ASASSKVEST TAVNNICKNR RRATSLVKKK RTIASQESSS  840
SLPNLSSSMT VVEEVDSHIQ DSGKTMNIMD KRHSTSGYDD SCVNSEGPPL SRPHLDKGTA  900
VLDVGENRVW VNASTIVPQE SSLYFQKNAV FCADENARQL KASGCHKLNK CNQLKSDGRF  960
SLNNLCETAD DCMTLASFIL KSRSAKVAKL HPDIAQSKDV ADDHSSRSCI SGGHDGVEKT  1020
NDPRMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-264366469155MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-264366469155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1706712RKKLRPR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770188.10.0PREDICTED: uncharacterized protein LOC104220923 isoform X1
TrEMBLA0A1U7VUY70.0A0A1U7VUY7_NICSY; uncharacterized protein LOC104220923 isoform X1
STRINGXP_009770188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108762124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-163myb domain protein 4r1