PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf01177g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 343aa MW: 38655.1 Da PI: 9.5372 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 178 | 226 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+taeeAa a++ a+ l+g Niben101Scf01177g01001.1 178 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAIAYDTAAYILRG 226 8******9.**********955...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.12E-31 | 176 | 236 | No hit | No description |
SMART | SM00380 | 7.3E-36 | 177 | 240 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-31 | 177 | 235 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-22 | 177 | 235 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.234 | 177 | 234 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-12 | 178 | 225 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-11 | 178 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-11 | 200 | 216 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 343 aa Download sequence Send to blast |
MKERLVSTSD STSSTKFSEF FPLTFLQNDQ GNNNIIPLNN FLESFHHHNQ VSDHQTCSSP 60 TSLSSNYPTL GLFLKEPSIL EISKRAEESV NNKSHNQIHQ QQQAAATTST TNWLKMNQTL 120 TNCTTTKGFS DYWLSTTKTQ PMKITTRSRK SSLHFNQGNQ KSSSSSSSLI AMSQGKLFRG 180 VRQRHWGKWV AEIRLPRNRT RVWLGTFDTA EEAAIAYDTA AYILRGDYAH LNFPHLKHQL 240 KANSINGNTA ALLEAKIRAI SSQTKKDNDH DQATKEVGLA TDDSRIKNVM SQNQEMENSE 300 KKVKNINQER LLSGNDIDGV QLSRMPSLDM DMIWDALLVS DSS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 173 | 244 | 1 | 68 | ATERF1 |
3gcc_A | 2e-21 | 173 | 244 | 1 | 68 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009607801.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF062-like | ||||
Refseq | XP_016454529.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF062-like | ||||
TrEMBL | A0A1S3YQN9 | 0.0 | A0A1S3YQN9_TOBAC; ethylene-responsive transcription factor ERF062-like | ||||
STRING | XP_009607801.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10921 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G13620.1 | 6e-63 | ERF family protein |