PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01169g04027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 227aa MW: 24201 Da PI: 5.2483 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.9e-17 | 16 | 54 | 1 | 40 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c Niben101Scf01169g04027.1 16 KGPWSPEEDELLQQLVHKHGPRNWSLISKSIP-GRSGKSC 54 79******************************.******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.475 | 11 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-13 | 11 | 55 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.0E-9 | 15 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-17 | 15 | 54 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-16 | 16 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-14 | 18 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MANSSNSSKK DMDRVKGPWS PEEDELLQQL VHKHGPRNWS LISKSIPGRS GKSCSADEGN 60 ELADQIFQNE QPPLKRSVSA GSAIPVSGFH FSPCSPSGSD SDSSLHVTSS SQSHLFKPVS 120 RAGGVFPPPS IDTSSPSDDP PTSLSLSLPG VDLAEFSNRS AESTQSKNPF QMLPVAMQIP 180 PPPPPPPQAA VVPFQRAPLN QEAAGVQQDK VFVPFSQELL GVLIAWE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:23067202, PubMed:23603962). Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA (PubMed:18162593, PubMed:9678577). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB44 is enhanced by direct interaction between MYB44 and PYL8 (PubMed:24894996). Transcriptional activator of WRKY70 by direct binding to its promoter region, especially at 5'-TAACNG-3' and 5'-CNGTTA-3' symmetric motifs (PubMed:23067202, PubMed:23603962). Activates salicylic acid (SA)- mediated defenses and subsequent resistance to biotrophic pathogen P.syringae pv. tomato DC3000, but represses jasmonic acid (JA)-mediated defenses responses against the necrotrophic pathogen A.brassicicola (PubMed:23067202). {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202, ECO:0000269|PubMed:23603962, ECO:0000269|PubMed:24894996, ECO:0000269|PubMed:9678577}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought, cold, high salinity, cadmium (CdCl(2)), salicylic acid (SA), jasmonate (JA), ethylene, gibberellic acid (GA), and ABA (PubMed:16463103, PubMed:18162593, PubMed:23067202). The induction by JA is COI1-dependent (PubMed:23067202). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016442421.1 | 1e-112 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | Q9FDW1 | 9e-33 | MYB44_ARATH; Transcription factor MYB44 | ||||
TrEMBL | A0A1S3XR47 | 1e-110 | A0A1S3XR47_TOBAC; transcription factor MYB44-like | ||||
STRING | XP_009798591.1 | 1e-111 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 7e-26 | myb domain protein 70 |