PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01154g08005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WOX | ||||||||
Protein Properties | Length: 198aa MW: 22944.3 Da PI: 8.8414 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59 | 7.9e-19 | 3 | 63 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t++ql +L++l++k r+p+ + ++++++l +++ ++V++WFqN++a++++ Niben101Scf01154g08005.1 3 RPRWSPTPQQLMILQDLYRKgLRNPTSFQVQKITAHLslfgKIQCKNVFYWFQNHKARDRQ 63 89*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 105.1 | 4.5e-34 | 2 | 64 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+Ptp+Q++iL++ly++Glr+P++ ++q+ita+L+ +Gki+ kNVfyWFQN+kaR+rqk Niben101Scf01154g08005.1 2 PRPRWSPTPQQLMILQDLYRKGLRNPTSFQVQKITAHLSLFGKIQCKNVFYWFQNHKARDRQK 64 579***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.463 | 1 | 64 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-7 | 1 | 68 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.20E-6 | 2 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-7 | 3 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.3E-16 | 3 | 63 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-11 | 3 | 64 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MPRPRWSPTP QQLMILQDLY RKGLRNPTSF QVQKITAHLS LFGKIQCKNV FYWFQNHKAR 60 DRQKLRKQLL HQIEKNPTED NDNTQLPLLI NNTNSNDVVD LVDNYPFFLP NVHTLYPHSP 120 TILLHQTEGK ETSSAQIMNN VGKVDLRLTE NDMMRTNVQG WVLMMTDNMG QSSVPCCSNV 180 RPLETLQLFP VKETGVTE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016487673.1 | 1e-131 | PREDICTED: WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A1S4BFQ5 | 1e-130 | A0A1S4BFQ5_TOBAC; WUSCHEL-related homeobox 3-like | ||||
STRING | XP_009626933.1 | 1e-130 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 8e-33 | WOX family protein |