PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01147g05011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 324aa MW: 35468.1 Da PI: 7.1576

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01147g05011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9.1e-05	216	256	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Niben101Scf01147g05011.1 216 RVRKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 256 7788899999999*99998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.617	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-4	212	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.29E-6	215	260	No hit	No description
SuperFamily	SSF47459	3.27E-11	215	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-8	216	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MMAGNPTNWW SMLMNGNNMH QQSEHISSSS SSSSHFYGAS NSSLADNSNQ DFPPRSLSQL 60 LLSGFSGDEE KFGISPFHQA RNSEDQNLNS VHIPSATNFR VNPNIDDVKP ELGQLYHYHH 120 HVQNEFQASL QEKLELSTDF TKHAAYTCQP LVANSWSQHQ DIPSPASSCI TTGLLNHNVL 180 NFSSNKNNKG ELKHQHPDNS SEFNSTSSGG ISKKARVRKE KLGDRITALH QLVSPFGKTD 240 TASVLSEAIG YIRFLQGQIQ ALSSPYLGNP SGSMGHISQQ SHCQHKTKDL RSRGLCLVPI 300 SCMQNVGSDT GADYWAPALG GSGF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016468406.1	0.0	PREDICTED: transcription factor bHLH68-like isoform X1
TrEMBL	A0A1S3ZVI2	0.0	A0A1S3ZVI2_TOBAC; transcription factor bHLH68-like isoform X1
STRING	XP_009608011.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1519	22	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-48	bHLH family protein