PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01142g00014.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 427aa MW: 48223.8 Da PI: 5.4896

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01142g00014.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.1	1.2e-22	126	209	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leH Niben101Scf01142g00014.1 126 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAMIRLRLVESSRWRVDEVKLEH 205 69**************************************99888.....8999************************* PP FAR1 86 nHel 89 nH + Niben101Scf01142g00014.1 206 NHLF 209 77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-20	126	209	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.878	308	344	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.5E-5	319	342	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-6	319	346	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MEEALGTSEQ LPEDEGSDNE VDSEEAFDIT CNGDQVLNVE ADELEATTGQ ILEFESHGTE 60 KSCERGLDFE SSDPRDNSHQ LLEFHSNGLG GGDTTIIDDH TGSSLGKFYP PPVVGMEFES 120 YEDAYNYYNC YAKELGFAIR VKSSWTKRNS KEKRGAVLCC NCEGFKTMKE ANSRRKETRT 180 GCLAMIRLRL VESSRWRVDE VKLEHNHLFD PERVQNSKSH KKMDAGVKRK LEPAVDVEVQ 240 TIKLYRTPAV ETLGYGSSDE RAFSGQVDGS THLKLKEGIA QVHANGPIIT YIVTERGAQG 300 DTGDARDFEV TYDKMGVEVR CICSCFNFKG YLCRHALSVL NYNGIEEIPN HYILSRWRKD 360 FKRLYAPELG SSNIDVSNPV QRFDHLHKRA MQVVDKGMTS QDHYMVAWQA FKESLNKVRL 420 AADKHVS

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MEEALGTSEQ LPEDEGSDNE VDSEEAFDIT CNGDQVLNVE ADELEATTGQ ILEFESHGTE  60
KSCERGLDFE SSDPRDNSHQ LLEFHSNGLG GGDTTIIDDH TGSSLGKFYP PPVVGMEFES  120
YEDAYNYYNC YAKELGFAIR VKSSWTKRNS KEKRGAVLCC NCEGFKTMKE ANSRRKETRT  180
GCLAMIRLRL VESSRWRVDE VKLEHNHLFD PERVQNSKSH KKMDAGVKRK LEPAVDVEVQ  240
TIKLYRTPAV ETLGYGSSDE RAFSGQVDGS THLKLKEGIA QVHANGPIIT YIVTERGAQG  300
DTGDARDFEV TYDKMGVEVR CICSCFNFKG YLCRHALSVL NYNGIEEIPN HYILSRWRKD  360
FKRLYAPELG SSNIDVSNPV QRFDHLHKRA MQVVDKGMTS QDHYMVAWQA FKESLNKVRL  420
AADKHVS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786841.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1
Refseq	XP_009786842.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X2
Refseq	XP_016454215.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1
Refseq	XP_016454216.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X2
Refseq	XP_016454217.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X3
Swissprot	Q9S793	7e-59	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A1S3YPR9	0.0	A0A1S3YPR9_TOBAC; protein FAR1-RELATED SEQUENCE 8-like isoform X2
TrEMBL	A0A1S3YQ91	0.0	A0A1S3YQ91_TOBAC; protein FAR1-RELATED SEQUENCE 8-like isoform X3
TrEMBL	A0A1S3YQF8	0.0	A0A1S3YQF8_TOBAC; protein FAR1-RELATED SEQUENCE 8-like isoform X1
TrEMBL	A0A1U7X409	0.0	A0A1U7X409_NICSY; protein FAR1-RELATED SEQUENCE 8-like isoform X2
TrEMBL	A0A1U7XB12	0.0	A0A1U7XB12_NICSY; protein FAR1-RELATED SEQUENCE 8-like isoform X1
STRING	XP_009786841.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	4e-61	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]