PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01139g03005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 291aa    MW: 33141.6 Da    PI: 7.6054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01139g03005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.18.9e-1590141155
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  Niben101Scf01139g03005.1  90 QRMTHIAVERNRRRQMNDYLAVLRSLIPPS---YAQRGDQASIVGGAINFVKELE 141
                               79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.30E-1588145No hitNo description
PROSITE profilePS5088815.96189140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-1889164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-1290141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-1590158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-1095146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MALETVVFQQ DPFTYSHKDF YNLGGFFHDY NWDSSHSSIA QSYNNNSSSP EVCTGFLPAE  60
YTPVETPVVS CRRKRRRTKC SKNKEEIENQ RMTHIAVERN RRRQMNDYLA VLRSLIPPSY  120
AQRGDQASIV GGAINFVKEL EQLLQFLEAH KQQVKNQLSP NNASQHPFSK FFTFPQYSTG  180
NNHPMAAAND GAMTEERQSA VADIEVTMVE NHANIKIFSR RRPKQLLKIV NWLQAMCLAI  240
LHLTVSTADH MVLYSFSVKV EDNCQLNTVS EIASAVHEMV AMIIKEEAMS C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17276RKRRR
27277RKRRRT
390101RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784356.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T46e-79BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1U7X3T80.0A0A1U7X3T8_NICSY; transcription factor bHLH96-like
STRINGXP_009784356.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]