PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01121g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 374aa    MW: 41083.6 Da    PI: 9.5757
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01121g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC811.1e-25143186144
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                               d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgrsrsrk++e
  Niben101Scf01121g00005.1 143 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRSRSRKPVE 186
                               79***************************************987 PP
2QLQ45.52.3e-1670105136
                       QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                               s+F+  Q+q+L+ Q+l+y++++a++PvPpeLl  ++
  Niben101Scf01121g00005.1  70 SYFSLGQWQELELQALIYRHFIAGAPVPPELLHLVK 105
                               789****************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.4E-870106IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.67571106IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.3E-1172104IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.141143187IPR014977WRC domain
PfamPF088791.2E-21144186IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDFNLKQWRN HQHESEEQET PTSSAKIPRL HLDFDSDSDS ALPLFVSEPT TKLSDSTTTT  60
PTKFPKMGSS YFSLGQWQEL ELQALIYRHF IAGAPVPPEL LHLVKKSIIT SPSSYYFPHP  120
FQQYPHYQQA LMQSGYRGRA AMDPEPGRCR RTDGKKWRCS RDVVAGQKYC ERHVHRGRSR  180
SRKPVEIPTP AINGSKLNNN TTVSHQNLAK MASHSAAATT HFSLSGPSPS IQTLHLNQRP  240
TESKKGPLEA LKEVSADGKS SGRILRQFFD DWPSQLQEGD NVGSNSSSVA SATSLSISMP  300
GNPSSDFSLK LSTGGHGYIA DAQDSNVQRS AWRTSMGGGP LAEALRSSTT NSSPTSVLHH  360
LSRGSTSEAS YIST
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246611.10.0PREDICTED: growth-regulating factor 3-like
TrEMBLA0A1J6J7F40.0A0A1J6J7F4_NICAT; Growth-regulating factor 3
STRINGXP_009771979.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.15e-59growth-regulating factor 4