PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01110g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 105aa MW: 11948.4 Da PI: 9.4671 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4e-08 | 4 | 48 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44 +WTt +++ +a ++ +g + Ia+++g g++ ++++ ++ Niben101Scf01110g00002.1 4 NWTTKQNKRFEEALVMYDKGtsseRLQNIAKYVG-GKSVEEVRRHY 48 8*********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.492 | 1 | 56 | IPR017884 | SANT domain |
SMART | SM00717 | 0.001 | 1 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-5 | 3 | 58 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-5 | 3 | 48 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.6E-12 | 4 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.07E-5 | 4 | 48 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MTTNWTTKQN KRFEEALVMY DKGTSSERLQ NIAKYVGGKS VEEVRRHYDL LVKDITQIEN 60 GQVPLPNYRT TTAPETNARG GYANEQSISR IVSVGFARCA RLIHE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-21 | 5 | 71 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019233800.1 | 1e-56 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | F4JVB8 | 2e-26 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A1J6KAR3 | 2e-55 | A0A1J6KAR3_NICAT; Protein radialis-like 1 | ||||
STRING | XP_009796752.1 | 7e-55 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 9e-29 | RAD-like 1 |
Publications ? help Back to Top | |||
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