PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01085g03003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 251aa MW: 28309.6 Da PI: 4.6033 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.2e-20 | 100 | 150 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +grW+AeIrdp+ r kr++lg+++t+eeAa +++a+ l+g Niben101Scf01085g03003.1 100 KKYRGVRQRP-WGRWAAEIRDPT----RgKRVWLGTYDTPEEAATVYDRAAVMLKG 150 59********.**********84....35*********************988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 1.8E-77 | 3 | 251 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 7.82E-34 | 100 | 158 | No hit | No description |
SuperFamily | SSF54171 | 4.18E-23 | 101 | 159 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-31 | 101 | 159 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-14 | 101 | 150 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.316 | 101 | 158 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-38 | 101 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 102 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 124 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MILQPPVKFS QHLLTTNKQV HELNMQNPQK VVRIILTDGD ATDSSDEEDD QFMVRRVKRY 60 VTQINFTSLL PESPKQDSQP QQSSRKRCLP SSDSDFSCRK KYRGVRQRPW GRWAAEIRDP 120 TRGKRVWLGT YDTPEEAATV YDRAAVMLKG PDAVTNFPLV SPAIETTEAE SIIVNPAKTE 180 VSSKDVALSP TSVLRSDDFG PFDGSLGFSE VDAFGFEIDS PFGLTGFGMS EKYFAEEFSE 240 FDFDDFALEV R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-22 | 100 | 159 | 4 | 64 | ATERF1 |
3gcc_A | 5e-22 | 100 | 159 | 4 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767000.1 | 1e-178 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
Refseq | XP_016487564.1 | 1e-178 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
Swissprot | O04682 | 2e-83 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A1S4BF98 | 1e-176 | A0A1S4BF98_TOBAC; pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | A0A1U7VYC2 | 1e-176 | A0A1U7VYC2_NICSY; pathogenesis-related genes transcriptional activator PTI6-like | ||||
STRING | XP_009767000.1 | 1e-177 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5227 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-36 | cytokinin response factor 4 |