PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01082g07003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 27193.1 Da PI: 6.9648 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.9 | 1.4e-14 | 112 | 165 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y GV +++ +g + Ae rdps g +r +lg++ tae+Aa a+++a+ k++g Niben101Scf01082g07003.1 112 TRYIGVKRRP-WGTFSAETRDPSRKG-EgARLWLGTYETAEDAALAYDQAAFKIRG 165 589****9*9.**********85533.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.73E-25 | 112 | 175 | No hit | No description |
Pfam | PF00847 | 1.5E-10 | 112 | 165 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-26 | 113 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.9E-28 | 113 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-18 | 113 | 174 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.535 | 113 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-8 | 114 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-8 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MEMNPDDETL FFSESHHLLE SIKQHLLDDS DFSEIFSPMS SCNEILPHSP SSSFSSFDFD 60 CSFLNWDENF EETLKPTEQN PSHESHEKYS ESEEQTQGPA VAREKKAPRD WTRYIGVKRR 120 PWGTFSAETR DPSRKGEGAR LWLGTYETAE DAALAYDQAA FKIRGSRARL NFPHLIGSNV 180 RKPARVTARR SRTRSPEPWS SSSTSSSENV PRKRNIDVIN SIAKAKFLRH GLNLQRLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-24 | 114 | 179 | 6 | 69 | ATERF1 |
3gcc_A | 3e-24 | 114 | 179 | 6 | 69 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019263102.1 | 1e-140 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A1J6JM52 | 1e-138 | A0A1J6JM52_NICAT; Ethylene-responsive transcription factor 13 | ||||
STRING | XP_009794568.1 | 1e-131 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 3e-21 | ethylene-responsive element binding factor 13 |