PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01082g04001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 25552.4 Da PI: 8.4432 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.4e-19 | 94 | 145 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr+++ +g+++AeIrdp + k +r +lg++ t+e+Aa a+++ + kl+g Niben101Scf01082g04001.1 94 KKYKGVRRRP-WGKYAAEIRDP---KrKGARLWLGTYETPEDAALAYDRTAFKLRG 145 59********.**********8...4334*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.85E-33 | 94 | 155 | No hit | No description |
Pfam | PF00847 | 1.9E-13 | 95 | 145 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.105 | 95 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-23 | 95 | 154 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.5E-37 | 95 | 159 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-31 | 95 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 119 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MQGISLEFDQ QNFLDTMQHL FNDHDFPQIF SELNSFNNTI QTSRNPGSEN TVFAQNMVQH 60 NQEKYADDHI VPLQETSSEN NKEPSSDQVP FEKKKYKGVR RRPWGKYAAE IRDPKRKGAR 120 LWLGTYETPE DAALAYDRTA FKLRGSRAVL NFPHLIESNV TEINRVRPRR RSRSPDIELS 180 YDQNDGPISK RRNVDLINSL ATANLDSRSI VERCLTSSFF A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-29 | 94 | 158 | 4 | 68 | ATERF1 |
3gcc_A | 3e-29 | 94 | 158 | 4 | 68 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009759672.1 | 1e-145 | PREDICTED: ethylene-responsive transcription factor 13-like | ||||
TrEMBL | A0A1U7UUE5 | 1e-144 | A0A1U7UUE5_NICSY; ethylene-responsive transcription factor 13-like | ||||
STRING | XP_009759672.1 | 1e-145 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 1e-37 | ethylene-responsive element binding factor 13 |