PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01076g04003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 10726.4 Da PI: 9.3782 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.4e-08 | 32 | 70 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++E++l+++ +k+ G + W +Ia +++ gR ++++ +w Niben101Scf01076g04003.1 32 MSKQEEDLIYRMHKLVGDR-WGLIAGRIP-GRRAEEIERFW 70 689**************99.*********.*********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.5E-5 | 28 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.34E-5 | 31 | 70 | No hit | No description |
Pfam | PF00249 | 1.8E-7 | 32 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-9 | 33 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.96E-7 | 33 | 72 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MDQNLHHQPK LMHHRCCSHE EVNSMEWEFI SMSKQEEDLI YRMHKLVGDR WGLIAGRIPG 60 RRAEEIERFW IMKHSDGFAN KRRQLRKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in epidermal cell fate specification. Negative regulator of trichome development, including endoreplication, by lateral inhibition involving intercellular interactions. Promotes the formation of hair developing cells (trichoblasts) in H position in root epidermis, probably by inhibiting non-hair cell (atrichoblasts) formation. {ECO:0000269|PubMed:10368181, ECO:0000269|PubMed:12356720}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negative autoregulation. Repressed by CPC. {ECO:0000269|PubMed:12356720}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009623671.1 | 1e-59 | PREDICTED: MYB-like transcription factor ETC3 | ||||
Refseq | XP_009761639.1 | 1e-59 | PREDICTED: MYB-like transcription factor ETC3 | ||||
Refseq | XP_016464336.1 | 1e-59 | PREDICTED: MYB-like transcription factor ETC3 | ||||
Refseq | XP_016502110.1 | 1e-59 | PREDICTED: MYB-like transcription factor ETC3 | ||||
Refseq | XP_019252948.1 | 1e-59 | PREDICTED: MYB-like transcription factor ETC3 isoform X2 | ||||
Swissprot | Q8GV05 | 7e-33 | TRY_ARATH; Transcription factor TRY | ||||
TrEMBL | A0A1S4CLV6 | 2e-58 | A0A1S4CLV6_TOBAC; MYB-like transcription factor ETC3 | ||||
TrEMBL | A0A1U7VH58 | 2e-58 | A0A1U7VH58_NICSY; MYB-like transcription factor ETC3 | ||||
STRING | XP_009761639.1 | 4e-59 | (Nicotiana sylvestris) | ||||
STRING | XP_009623671.1 | 4e-59 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11707 | 18 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 3e-35 | MYB_related family protein |