PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01075g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 400aa    MW: 44549.9 Da    PI: 4.615
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01075g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.7e-1589134352
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                                kGVr +k +g+++AeIrdp     + kr++lg+f+t ++Aa+a++  + +
  Niben101Scf01075g01003.1  89 PKGVRMRK-WGKYAAEIRDPL----QgKRIWLGTFDTVKGAAEAYDTKKAE 134
                               79****99.**********84....35*******************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-888130IPR001471AP2/ERF domain
PROSITE profilePS5103217.59688150IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1588135IPR016177DNA-binding domain
PRINTSPR003673.1E-689100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-1990135IPR001471AP2/ERF domain
CDDcd000181.59E-1890129No hitNo description
SMARTSM003801.7E-1590147IPR001471AP2/ERF domain
PRINTSPR003673.1E-6111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MMSDKERAND GCVGSVRKVR IIYDDPDATE SESENDHNIR NVVRIKRVVK EVNISSASLE  60
KKDSEKSSVK SSNKSLENKR VQIKSSSLPK GVRMRKWGKY AAEIRDPLQG KRIWLGTFDT  120
VKGAAEAYDT KKAEFDRRNL SEKGKNLSSP RAPHECSTAC SSHPTNSTSS LYSLPSPSSV  180
LDVPTSSAAA AAECIDIPMK DMNPVPVVEV EQPASEIVEK QLLWPPSGCQ DYNPGFEDQM  240
LYEDPLIEQG TISDILVEMT EFNIMKKTKA RQPTIEICRK STKGIEDRHV NCADQSITSP  300
SISAELNMMN FEETAVSGNN LKLLGFDENS LFGNDFTQTF DPYTDFIGLD SNFLCCDGLE  360
EFVYGMNEDF RDNVGANSPK LDGVELRWLD EVLIQDQSVL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791614.10.0PREDICTED: ethylene-responsive transcription factor CRF6-like
RefseqXP_016474894.10.0PREDICTED: ethylene-responsive transcription factor CRF6-like
TrEMBLA0A1S4AE410.0A0A1S4AE41_TOBAC; ethylene-responsive transcription factor CRF6-like
TrEMBLA0A1U7XXB20.0A0A1U7XXB2_NICSY; ethylene-responsive transcription factor CRF6-like
STRINGXP_009791614.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127181519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-18ERF family protein