PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf01063g03005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 496aa MW: 55282.9 Da PI: 5.2313 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.3 | 3.8e-36 | 17 | 109 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 Fl+k+y++++d+++++++sws++ nsfvv++ efa++vLpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F Niben101Scf01063g03005.1 17 FLSKTYDMVDDSSTDSVVSWSKSHNSFVVWNVPEFARDVLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGF 92 9****************************************************************999.........******** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkkse 103 +g+k++l++i r+k + Niben101Scf01063g03005.1 93 LRGHKHQLKSISRRKPS 109 **************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.9E-38 | 10 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.28E-34 | 12 | 106 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.4E-59 | 13 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.3E-31 | 17 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 17 | 40 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 55 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 56 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 68 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 496 aa Download sequence Send to blast |
MDGVHENTVV GNSPPPFLSK TYDMVDDSST DSVVSWSKSH NSFVVWNVPE FARDVLPKYF 60 KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGHKHQL KSISRRKPSQ VQGHQQTTSQ 120 VQNASVGSCV EVGKFGTEDE VERLKRDKDV LMQELVELKQ QQQATDHQMQ TVGQRVQLME 180 KRQQQMMSFL AKAMQSPGFV AQLVHQQNGN NRRIAGMNKK RRLPDQDEEN VAGNPVNMSR 240 DGRIVRYQPS MNEAAKALLR QILKINTPGR LDNRLKNTNG LLTDNPLSPK NALSGDTSSR 300 ISGVTLSEVL SMSSQSHIMS DSGFPFSSCS SVMSESPSST TVVPGEAKVP TLCETDALNS 360 LTDHDLPEFS QEQRINRQET FGITGLKRSE TGNVPYIDTQ AFLDGVTAIV PDGFSADTHV 420 DVLLDDVPKL PAINDIFWDQ ILSASPLTGD MDEIGIEDGL EKEEDFLGVQ ENDLDKLNHM 480 CHLTEQMGLL SSAAQI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-24 | 15 | 106 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-24 | 15 | 106 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-24 | 15 | 106 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019240189.1 | 0.0 | PREDICTED: heat stress transcription factor A-1-like | ||||
Swissprot | Q84T61 | 1e-149 | HSFA1_ORYSJ; Heat stress transcription factor A-1 | ||||
TrEMBL | A0A1J6JRQ3 | 0.0 | A0A1J6JRQ3_NICAT; Heat stress transcription factor a-1 | ||||
STRING | XP_009623591.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5054 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-118 | heat shock factor 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|