PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01063g02004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 67aa    MW: 7864.96 Da    PI: 11.0857
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01063g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-17649144
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                              +g+WT+eEd++lvd++++ G g+W++ +++ g++R +k+c++rw
  Niben101Scf01063g02004.1  6 KGPWTPEEDQKLVDYIHRNGHGNWRALPKRAGLNRYGKSCRLRW 49
                              79****************************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.622157IPR017930Myb domain
SuperFamilySSF466899.18E-18367IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-19448IPR009057Homeodomain-like
SMARTSM007172.7E-10555IPR001005SANT/Myb domain
PfamPF002494.3E-16649IPR001005SANT/Myb domain
CDDcd001675.48E-9849No hitNo description
Gene3DG3DSA:1.10.10.602.8E-74967IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MNGLKKGPWT PEEDQKLVDY IHRNGHGNWR ALPKRAGLNR YGKSCRLRWS AIATRLRGRT  60
DNEIKNY
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019259157.14e-32PREDICTED: transcription factor MYB39-like
SwissprotQ9S9Z27e-30MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A314LEP51e-30A0A314LEP5_NICAT; Transcription factor myb39
STRINGXP_009776410.18e-31(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2162222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-32myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]