PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01035g04005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 471aa    MW: 51857.7 Da    PI: 8.4433
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01035g04005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-17167216155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Niben101Scf01035g04005.1 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216
                               78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-9167216IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-16167225IPR016177DNA-binding domain
PROSITE profilePS5103217.794168224IPR001471AP2/ERF domain
SMARTSM003803.7E-32168230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-17168224IPR001471AP2/ERF domain
CDDcd000181.67E-11168226No hitNo description
CDDcd000186.23E-13259302No hitNo description
SuperFamilySSF541712.35E-6259303IPR016177DNA-binding domain
SMARTSM003802.9E-12260308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MLDLNVSAVS VNSNCDETDP NNNTFFFKDE YSAGTSNTTA SSSVVNAPVA GDEDSNSSSV  60
HHGSKRAHHS LSTLNFSILK SDRAIEIEDD MSTDDVLTRQ LFPVKNESQV QVQVQGQGTR  120
IQGQSQCWLN LSVPESGGGA EMGIYKPPAP AQQPVKKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFNITDYEK DMDQMKNLSK  240
EEFVQVLRRQ STGFSRGNSK YRGVTLHKCG RWEARMGQFL GKKAYDKAAI KCNGREAVTN  300
FEPNTYERDI KEDNKDGNGQ NLDLNLWISP PLAGPKRDEI GRNVPFNFGA REMVIGRILE  360
IENSSTAPQG APTASKLSLL TGVYPDFSPH NMDGAMAKVE ATSSPGFPNW AWKIHSQGLV  420
TPVPVFSSSA ASSGFSTTTT LYPNTLLLPS NQLRLPTNST FQHPPVTLNI S
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475255.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK035e-92RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1S4AEY80.0A0A1S4AEY8_TOBAC; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_009772737.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-86related to AP2.7